miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52918_ptc-miRf11096-akr:pmrd
Length = 80
Score = 105 bits (53), Expect = 5e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 14 agtggtaagagcttgggactaaggggtttgctccctcttaggtctcaggttcaaacc 70
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 11 agtggtaagagcttgggactaaggggtttgctccctcttaggtctcaggttcgaacc 67
>52111_ptc-miRf10289-akr:pmrd
Length = 81
Score = 81.8 bits (41), Expect = 7e-17
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 4 gtggtggcctagtggtaagagcttgggactaaggggtttgctccctcttaggtctcaggt 63
||||||||| ||||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct: 1 gtggtggcccagtggtaagagcttgggaccaagatgtttgctccctctgtggtctcaggt 60
Query: 64 tcaaaccttatggctgctcat 84
|||| || | ||| |||||||
Sbjct: 61 tcaagccctgtggttgctcat 81
>53982_ptc-miRf12160-akr:pmrd
Length = 81
Score = 79.8 bits (40), Expect = 3e-16
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 4 gtggtggcctagtggtaagagcttgggactaaggggtttgctccctcttaggtctcaggt 63
|||||||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct: 1 gtggtggctcagtggtaagagcttgggaccaagaggtttgctccctctgtggtctcaggt 60
Query: 64 tcaa 67
||||
Sbjct: 61 tcaa 64
>53981_ptc-miRf12159-akr:pmrd
Length = 92
Score = 77.8 bits (39), Expect = 1e-15
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 1 taggtggtggcctagtggtaagagcttgggactaaggggtttgctccctcttaggtctca 60
|||||| || || ||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct: 4 taggtgatgacccagtggtaagagcttgggaccaagaggtttgctccctctgtggtctca 63
Query: 61 ggttcaaaccttatggctgctca 83
||||| | || ||||| ||||||
Sbjct: 64 ggttcgagccctatggttgctca 86
>53706_ptc-miRf11884-akr:pmrd
Length = 81
Score = 73.8 bits (37), Expect = 2e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 5 tggtggcctagtggtaagagcttgggactaaggggtttgctccctcttaggtctcaggtt 64
|||||||| ||||||||||||||||||| ||| |||||||| ||||| |||||||||||
Sbjct: 2 tggtggcccagtggtaagagcttgggaccaagaggtttgcttcctctgtggtctcaggtt 61
Query: 65 c 65
|
Sbjct: 62 c 62
>54124_ptc-miRf12302-akr:pmrd
Length = 81
Score = 67.9 bits (34), Expect = 1e-12
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 4 gtggtggcctagtggtaagagcttgggactaaggggtttgctccctcttaggtctcaggt 63
||||||||| ||||||||||||||||||| ||| | ||||||| |||| ||||||||||
Sbjct: 1 gtggtggcccagtggtaagagcttgggaccaagagatttgctctctctgtggtctcaggt 60
Query: 64 tc 65
||
Sbjct: 61 tc 62
>53107_ptc-miRf11285-akr:pmrd
Length = 81
Score = 60.0 bits (30), Expect = 3e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 4 gtggtggcctagtggtaagagcttgggactaaggggtttgctccctcttaggtctcag 61
||||||||| ||||||||||| ||||||| ||| |||||||||| ||| ||||||||
Sbjct: 1 gtggtggcccagtggtaagagtttgggaccaagaggtttgctccttctgtggtctcag 58
>52719_ptc-miRf10897-akr:pmrd
Length = 119
Score = 60.0 bits (30), Expect = 3e-10
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 1 taggtggtggcctagtggtaagagcttgggactaaggggtttgctc 46
|||||||||| | ||||||||||||||||||| ||| |||||||||
Sbjct: 46 taggtggtggtccagtggtaagagcttgggaccaagaggtttgctc 1
>53646_ptc-miRf11824-akr:pmrd
Length = 109
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1 taggtggtggcctagtggtaagagcttgggactaaggggtt 41
|||||||||| | ||||||||||||||||||| ||| ||||
Sbjct: 69 taggtggtggtccagtggtaagagcttgggaccaagaggtt 109
>53645_ptc-miRf11823-akr:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 taggtggtggcctagtggtaagagcttgggac 32
|||||||||| | |||||||||||||||||||
Sbjct: 64 taggtggtggtccagtggtaagagcttgggac 95
>53367_ptc-miRf11545-akr:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 1 taggtggtggcctagtggtaagagcttgggactaaggggtttgctccc 48
|||||||||| | |||||||||| ||||||| ||| |||||||||||
Sbjct: 48 taggtggtggtccagtggtaagaacttgggatcaagaggtttgctccc 1
>54152_ptc-miRf12330-akr:pmrd
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 4 gtggtggcctagtggtaagagcttgggactaaggggtttgctccctc 50
||||||| | |||||||||| ||||||| ||| |||||||||||||
Sbjct: 1 gtggtggtccagtggtaagaacttgggatcaagaggtttgctccctc 47
>52747_ptc-miRf10925-akr:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 4 gtggtggcctagtggtaagagcttgggactaaggggtttgctccctcttaggtctcaggt 63
||||||||| |||||||||| |||||| ||| ||||||||| ||| ||||||||||
Sbjct: 1 gtggtggcccagtggtaagaatttgggatcaagaggtttgctctttctgtggtctcaggt 60
Query: 64 tc 65
||
Sbjct: 61 tc 62
>52547_ptc-miRf10725-akr:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 6e-05
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 1 taggtggtggcctagtggtaagagcttgggactaaggggtttgctccctcttaggtctca 60
|||||||||| | |||||||| ||| ||||| ||| |||||||| ||||| ||||||
Sbjct: 5 taggtggtggtccagtggtaaaagcctgggatcaagaggtttgcttcctctgtagtctca 64
Query: 61 ggttc 65
|||||
Sbjct: 65 ggttc 69
>53554_ptc-miRf11732-akr:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggtggcctagtggtaagagcttggga 31
||||||| | ||||||||||||||||||
Sbjct: 1 gtggtggtccagtggtaagagcttggga 28
