miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51660_ptc-miR169c:pmrd
Length = 102
Score = 170 bits (86), Expect = 2e-43
Identities = 98/102 (96%)
Strand = Plus / Plus
Query: 41 aagtttgatgcagccaaggatgatttgccgacgactcagtttttgcttccatatggtagg 100
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 1 aagtttgatgcagccaaggatgacttgccgacgactcaatttttgcttccatatggtaga 60
Query: 101 agagatgaagaggttggcaggttttccttggctacattttcc 142
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61 agagatgaataggttggcaggttttccttggctacattttcc 102
>54368_ptr-miR169b:pmrd
Length = 84
Score = 167 bits (84), Expect = 4e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 51 cagccaaggatgatttgccgacgactcagtttttgcttccatatggtaggagagatgaag 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagccaaggatgatttgccgacgactcagtttttgcttccatatggtaggagagatgaag 60
Query: 111 aggttggcaggttttccttggcta 134
||||||||||||||||||||||||
Sbjct: 61 aggttggcaggttttccttggcta 84
>52003_ptc-miRf10181-akr:pmrd
Length = 113
Score = 63.9 bits (32), Expect = 4e-11
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 45 ttgatgcagccaaggatgatttgccgacgactcagtttttgctt 88
||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 4 ttgatgcagccaaggatgacttgccgacgactc-gtttttgctt 46
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 113 gttggcaggttttccttggctacatttt 140
||||||||||| | ||||||||||||||
Sbjct: 83 gttggcaggttgttcttggctacatttt 110
>51659_ptc-miR169b:pmrd
Length = 113
Score = 63.9 bits (32), Expect = 4e-11
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 45 ttgatgcagccaaggatgatttgccgacgactcagtttttgctt 88
||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 5 ttgatgcagccaaggatgacttgccgacgactc-gtttttgctt 47
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 113 gttggcaggttttccttggctacatttt 140
||||||||||| | ||||||||||||||
Sbjct: 84 gttggcaggttgttcttggctacatttt 111
>54367_ptr-miR169a:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 cagccaaggatgatttgccgacgactc 77
||||||||||||| |||||||||||||
Sbjct: 1 cagccaaggatgacttgccgacgactc 27
>48309_bdi-miR169a:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 gatgcagccaaggatgatttgccgac 72
||||||||||||||||| ||||||||
Sbjct: 12 gatgcagccaaggatgacttgccgac 37
>54809_vvi-miR169g:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 40 aaagtttgatgcagccaaggatgatttgccgac 72
||||| || ||||||||||||||| ||||||||
Sbjct: 2 aaagtatggtgcagccaaggatgacttgccgac 34
>51652_ptc-miR169a:pmrd
Length = 165
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 atgcagccaaggatgatttgccgac 72
|||||||||||||||| ||||||||
Sbjct: 8 atgcagccaaggatgacttgccgac 32
>48718_mtr-miR169b:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 atgcagccaaggatgatttgccgac 72
|||||||||||||||| ||||||||
Sbjct: 18 atgcagccaaggatgacttgccgac 42
>48717_mtr-miR169a:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 atgcagccaaggatgatttgccgac 72
|||||||||||||||| ||||||||
Sbjct: 18 atgcagccaaggatgacttgccgac 42
>48561_gma-miR169a:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 46 tgatgcagccaaggatgatttgccg 70
|||||||||||||||||| ||||||
Sbjct: 16 tgatgcagccaaggatgacttgccg 40
>55005_zma-miR169c:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 gatgcagccaaggatgatttgccg 70
||||||||||||||||| ||||||
Sbjct: 17 gatgcagccaaggatgacttgccg 40
>50631_osa-miRf11416-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 47 gatgcagccaaggatgatttgccg 70
||||||||||||||||| ||||||
Sbjct: 127 gatgcagccaaggatgacttgccg 104
>50630_osa-miRf11415-akr:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 gatgcagccaaggatgatttgccg 70
||||||||||||||||| ||||||
Sbjct: 18 gatgcagccaaggatgacttgccg 41
>49845_osa-miRf10630-akr:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 47 gatgcagccaaggatgatttgccg 70
||||||||||||||||| ||||||
Sbjct: 107 gatgcagccaaggatgacttgccg 84
>48891_osa-miR169p:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 47 gatgcagccaaggatgatttgccg 70
||||||||||||||||| ||||||
Sbjct: 120 gatgcagccaaggatgacttgccg 97
>48878_osa-miR169c:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 gatgcagccaaggatgatttgccg 70
||||||||||||||||| ||||||
Sbjct: 7 gatgcagccaaggatgacttgccg 30
