miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53554_ptc-miRf11732-akr:pmrd
Length = 81
Score = 101 bits (51), Expect = 7e-23
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 2 gtggtggttaagtggtaagagcttgggatcaagatgtttgttttctctgtggtcttaagt 61
|||||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct: 1 gtggtggtccagtggtaagagcttgggatcaagaagtttgttttctctgtggtctcaggt 60
Query: 62 tcaaaccctgtggttgctc 80
|| | ||||||||||||||
Sbjct: 61 tcgagccctgtggttgctc 79
>52111_ptc-miRf10289-akr:pmrd
Length = 81
Score = 81.8 bits (41), Expect = 7e-17
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 12 agtggtaagagcttgggatcaagatgtttgttttctctgtggtcttaagttcaaaccctg 71
|||||||||||||||||| ||||||||||| | ||||||||||| | |||||| |||||
Sbjct: 11 agtggtaagagcttgggaccaagatgtttgctccctctgtggtctcaggttcaagccctg 70
Query: 72 tggttgctc 80
|||||||||
Sbjct: 71 tggttgctc 79
>53986_ptc-miRf12164-akr:pmrd
Length = 81
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 12 agtggtaagagcttgggatcaagatgtttgttttctctgtggtcttaagttcaaaccctg 71
|||||||||| ||||||||||||| ||||||| ||||||||||||| |||| | || ||
Sbjct: 11 agtggtaagaacttgggatcaagaggtttgttccctctgtggtcttaggttcgagccttg 70
Query: 72 tggttgctc 80
|||||||||
Sbjct: 71 tggttgctc 79
>53985_ptc-miRf12163-akr:pmrd
Length = 81
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 12 agtggtaagagcttgggatcaagatgtttgttttctctgtggtcttaagttcaaaccctg 71
|||||||||| ||||||||||||| ||||||| ||||||||||||| |||| | || ||
Sbjct: 11 agtggtaagaacttgggatcaagaggtttgttccctctgtggtcttaggttcgagccttg 70
Query: 72 tggttgctc 80
|||||||||
Sbjct: 71 tggttgctc 79
>53706_ptc-miRf11884-akr:pmrd
Length = 81
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 12 agtggtaagagcttgggatcaagatgtttgttttctctgtggtcttaagttcaaaccctg 71
|||||||||||||||||| ||||| ||||| || ||||||||||| | |||| | |||||
Sbjct: 11 agtggtaagagcttgggaccaagaggtttgcttcctctgtggtctcaggttcgagccctg 70
Query: 72 tggttgctc 80
|||||||||
Sbjct: 71 tggttgctc 79
>53982_ptc-miRf12160-akr:pmrd
Length = 81
Score = 69.9 bits (35), Expect = 3e-13
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 2 gtggtggttaagtggtaagagcttgggatcaagatgtttgttttctctgtggtcttaagt 61
||||||| | |||||||||||||||||| ||||| ||||| | ||||||||||| | ||
Sbjct: 1 gtggtggctcagtggtaagagcttgggaccaagaggtttgctccctctgtggtctcaggt 60
Query: 62 tcaaaccctgtggtt 76
|||| ||||||||||
Sbjct: 61 tcaagccctgtggtt 75
>54124_ptc-miRf12302-akr:pmrd
Length = 81
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 12 agtggtaagagcttgggatcaagatgtttgttttctctgtggtcttaagttcaaaccctg 71
|||||||||||||||||| ||||| |||| | |||||||||||| | |||| | |||||
Sbjct: 11 agtggtaagagcttgggaccaagagatttgctctctctgtggtctcaggttcgagccctg 70
Query: 72 tggttgctc 80
|||||||||
Sbjct: 71 tggttgctc 79
>53981_ptc-miRf12159-akr:pmrd
Length = 92
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 12 agtggtaagagcttgggatcaagatgtttgttttctctgtggtcttaagttcaaaccctg 71
|||||||||||||||||| ||||| ||||| | ||||||||||| | |||| | ||||
Sbjct: 17 agtggtaagagcttgggaccaagaggtttgctccctctgtggtctcaggttcgagcccta 76
Query: 72 tggttgctc 80
|||||||||
Sbjct: 77 tggttgctc 85
>52747_ptc-miRf10925-akr:pmrd
Length = 81
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 12 agtggtaagagcttgggatcaagatgtttgttttctctgtggtcttaagttcaaaccctg 71
|||||||||| |||||||||||| ||||| | | |||||||||| | |||| | |||||
Sbjct: 11 agtggtaagaatttgggatcaagaggtttgctctttctgtggtctcaggttcgagccctg 70
Query: 72 tggttgctc 80
|||||||||
Sbjct: 71 tggttgctc 79
>54152_ptc-miRf12330-akr:pmrd
Length = 81
Score = 54.0 bits (27), Expect = 2e-08
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 2 gtggtggttaagtggtaagagcttgggatcaagatgtttgttttctctgtggtcttaagt 61
|||||||| |||||||||| ||||||||||||| ||||| | ||| ||||| | | ||
Sbjct: 1 gtggtggtccagtggtaagaacttgggatcaagaggtttgctccctccgtggtttcaggt 60
Query: 62 tcaaaccctgtggttgctc 80
|| | ||||||||||||||
Sbjct: 61 tcgagccctgtggttgctc 79
>53367_ptc-miRf11545-akr:pmrd
Length = 126
Score = 50.1 bits (25), Expect = 2e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1 ggtggtggttaagtggtaagagcttgggatcaagatgtttg 41
||||||||| |||||||||| ||||||||||||| |||||
Sbjct: 46 ggtggtggtccagtggtaagaacttgggatcaagaggtttg 6
>52719_ptc-miRf10897-akr:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 2e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1 ggtggtggttaagtggtaagagcttgggatcaagatgtttg 41
||||||||| |||||||||||||||||| ||||| |||||
Sbjct: 44 ggtggtggtccagtggtaagagcttgggaccaagaggtttg 4
>52547_ptc-miRf10725-akr:pmrd
Length = 93
Score = 48.1 bits (24), Expect = 9e-07
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 1 ggtggtggttaagtggtaagagcttgggatcaagatgtttgttttctctgtggtct 56
||||||||| |||||||| ||| ||||||||||| ||||| || |||||| ||||
Sbjct: 7 ggtggtggtccagtggtaaaagcctgggatcaagaggtttgcttcctctgtagtct 62
>53646_ptc-miRf11824-akr:pmrd
Length = 109
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 ggtggtggttaagtggtaagagcttgggatcaaga 35
||||||||| |||||||||||||||||| |||||
Sbjct: 71 ggtggtggtccagtggtaagagcttgggaccaaga 105
>53645_ptc-miRf11823-akr:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 1e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 ggtggtggttaagtggtaagagcttgggatcaag 34
||||||||| |||||||||||||||||| ||||
Sbjct: 66 ggtggtggtccagtggtaagagcttgggaccaag 99
>53107_ptc-miRf11285-akr:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 57/69 (82%)
Strand = Plus / Plus
Query: 12 agtggtaagagcttgggatcaagatgtttgttttctctgtggtcttaagttcaaaccctg 71
||||||||||| |||||| ||||| ||||| | |||||||||| | ||| | |||||
Sbjct: 11 agtggtaagagtttgggaccaagaggtttgctccttctgtggtctcagattcgagccctg 70
Query: 72 tggttgctc 80
|||||||||
Sbjct: 71 tggttgctc 79
