miRNEST 2.0, an integrative microRNA resource :: BLAST
>54868_vvi-miR396a:pmrd
Length = 116
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctgtcatgcttttccacagctttcttgaact 31
|||||||||||||||||||||||||||||||
Sbjct: 3 ctgtcatgcttttccacagctttcttgaact 33
>51738_ptc-miR396e:pmrd
Length = 145
Score = 60.0 bits (30), Expect = 6e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 gtcatgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaactt 31
>51737_ptc-miR396d:pmrd
Length = 154
Score = 60.0 bits (30), Expect = 6e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 gtcatgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaactt 31
>48579_gma-miR396b:pmrd
Length = 126
Score = 60.0 bits (30), Expect = 6e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 gtcatgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||||
Sbjct: 12 gtcatgcttttccacagctttcttgaactt 41
>54869_vvi-miR396b:pmrd
Length = 108
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||
Sbjct: 7 catgcttttccacagctttcttgaactt 34
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5 catgcttttccacagctttcttgaactt 32
|||| ||| |||||||||||||||||||
Sbjct: 104 catggtttcccacagctttcttgaactt 77
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 5 catgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaactt 114
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 5 catgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaactt 114
>51564_pta-miR396:pmrd
Length = 119
Score = 56.0 bits (28), Expect = 9e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 tgtcatgcttttccacagctttcttgaacttt 33
|||||| |||||||||||||||||||||||||
Sbjct: 7 tgtcatacttttccacagctttcttgaacttt 38
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 5 catgcttttccacagctttcttgaacttt 33
|||||||| |||||| |||||||||||||
Sbjct: 110 catgctttcccacagttttcttgaacttt 82
>48580_gma-miR396c:pmrd
Length = 117
Score = 56.0 bits (28), Expect = 9e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ctgtcatgcttttccacagctttcttgaactt 32
|||| |||||||||||||||||||||||||||
Sbjct: 10 ctgttatgcttttccacagctttcttgaactt 41
>47009_ath-miR396b:pmrd
Length = 135
Score = 56.0 bits (28), Expect = 9e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3 gtcatgcttttccacagctttcttgaactttc 34
||||| ||||||||||||||||||||||||||
Sbjct: 2 gtcatacttttccacagctttcttgaactttc 33
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 54.0 bits (27), Expect = 4e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 6 atgcttttccacagctttcttgaactt 32
|||||||||||||||||||||||||||
Sbjct: 148 atgcttttccacagctttcttgaactt 122
>48748_mtr-miR396a:pmrd
Length = 93
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 tgcttttccacagctttcttgaactt 32
||||||||||||||||||||||||||
Sbjct: 1 tgcttttccacagctttcttgaactt 26
>54487_sbi-miR396c:pmrd
Length = 162
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
||||| ||||||||||||||||||||||
Sbjct: 14 catgcctttccacagctttcttgaactt 41
>52339_ptc-miRf10517-akr:pmrd
Length = 164
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
||||||||||||| ||||||||||||||
Sbjct: 1 catgcttttccacggctttcttgaactt 28
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 5 catgcttttccacagctttcttgaactt 32
|||| |||||||||||||||||||||||
Sbjct: 100 catgtttttccacagctttcttgaactt 73
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 3 gtcatgcttttccacagctttcttgaactt 32
|||||||| |||||| ||||||||||||||
Sbjct: 1 gtcatgctattccacggctttcttgaactt 30
>51740_ptc-miR396g:pmrd
Length = 168
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
||||||||||||| ||||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaactt 31
>51736_ptc-miR396c:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
|||| |||||||||||||||||||||||
Sbjct: 4 catgtttttccacagctttcttgaactt 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 4 tcatgcttttccacagctttcttgaactt 32
||||||| |||||| ||||||||||||||
Sbjct: 102 tcatgctattccacggctttcttgaactt 74
>48947_osa-miR396c:pmrd
Length = 141
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 catgcttttccacagctttcttgaactt 32
||||| ||||||||||||||||||||||
Sbjct: 4 catgcctttccacagctttcttgaactt 31
>54584_smo-miR396:pmrd
Length = 168
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 tcatgcttttccacagctttcttgaac 30
|||||||||||||| ||||||||||||
Sbjct: 3 tcatgcttttccacggctttcttgaac 29
>48374_bna-miR396a:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaactttc 34
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactttc 23
>55078_zma-miR396g:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tttccacagctttcttgaactt 32
||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaactt 23
>55077_zma-miR396f:pmrd
Length = 166
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tttccacagctttcttgaactt 32
||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaactt 23
>46888_aqc-miR396b:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaacttt 33
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttt 22
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55079_zma-miR396h:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54486_sbi-miR396b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaact 28
>51735_ptc-miR396b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>48578_gma-miR396a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 ttccacagctttcttgaact 31
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
