miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54319_ptc-miRf12497-akr:pmrd
Length = 156
Score = 93.7 bits (47), Expect = 3e-20
Identities = 114/137 (83%), Gaps = 7/137 (5%)
Strand = Plus / Plus
Query: 7 ctatatccaataatattgggtttggctataacatcttacctaaaagtaatatttataata 66
||||| |||| ||| |||||||||||| ||| || |||||| ||| ||||||||||||
Sbjct: 7 ctatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataata 66
Query: 67 gtaataataatattaaacttgcatgacc-------tagtaggtctagctccaataccaga 119
||||||||||||||||||||||||||| | | ||||||||| ||||||||||
Sbjct: 67 ttaataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccaga 126
Query: 120 cccaatagccttggatg 136
|||||||| ||||||||
Sbjct: 127 cccaatagtcttggatg 143
>52651_ptc-miRf10829-akr:pmrd
Length = 138
Score = 91.7 bits (46), Expect = 1e-19
Identities = 113/136 (83%), Gaps = 7/136 (5%)
Strand = Plus / Plus
Query: 8 tatatccaataatattgggtttggctataacatcttacctaaaagtaatatttataatag 67
|||| |||| ||| |||||||||||| ||| || |||||| ||| ||||||||||||
Sbjct: 1 tatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataatat 60
Query: 68 taataataatattaaacttgcatgacc-------tagtaggtctagctccaataccagac 120
||||||||||||||||||||||||||| | | ||||||||| |||||||||||
Sbjct: 61 taataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccagac 120
Query: 121 ccaatagccttggatg 136
||||||| ||||||||
Sbjct: 121 ccaatagtcttggatg 136
>52538_ptc-miRf10716-akr:pmrd
Length = 140
Score = 87.7 bits (44), Expect = 2e-18
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 7 ctatatccaataatattgggtttggctataacatcttacctaaaagtaatatttataata 66
|||||||||| ||| |||||||||||| ||| ||| ||| | ||||||||||||||||
Sbjct: 1 ctatatccaagaatcttgggtttggctgcaacgtctgaccctagagtaatatttataata 60
Query: 67 gtaataataatattaaacttgcatgacc 94
||||||||| |||||||||||||||||
Sbjct: 61 ttaataataacattaaacttgcatgacc 88
>52129_ptc-miRf10307-akr:pmrd
Length = 140
Score = 87.7 bits (44), Expect = 2e-18
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 7 ctatatccaataatattgggtttggctataacatcttacctaaaagtaatatttataata 66
|||||||||| ||| |||||||||||| ||| ||| ||| | ||||||||||||||||
Sbjct: 1 ctatatccaagaatcttgggtttggctgcaacgtctgaccctagagtaatatttataata 60
Query: 67 gtaataataatattaaacttgcatgacc 94
||||||||| |||||||||||||||||
Sbjct: 61 ttaataataacattaaacttgcatgacc 88
>52364_ptc-miRf10542-akr:pmrd
Length = 140
Score = 75.8 bits (38), Expect = 8e-15
Identities = 84/100 (84%), Gaps = 7/100 (7%)
Strand = Plus / Plus
Query: 44 acctaaaagtaatatttataatagtaataataatattaaacttgcatgacc-------ta 96
|||||| ||| |||||||||||| ||||||||| ||||||||||||||||| |
Sbjct: 38 acctaagagtgatatttataatattaataataacattaaacttgcatgacccaagtttaa 97
Query: 97 gtaggtctagctccaataccagacccaatagccttggatg 136
| ||||||||| |||||||||||||||||| ||||||||
Sbjct: 98 atgggtctagctgcaataccagacccaatagtcttggatg 137
>53794_ptc-miRf11972-akr:pmrd
Length = 154
Score = 71.9 bits (36), Expect = 1e-13
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 3 aaagctatatccaataatattgggtttggctataacatcttacctaaaagtaatatttat 62
|||||||||||||| | | | ||||||| || ||| || |||||| ||| ||||||||
Sbjct: 5 aaagctatatccaagagtctcgggtttgactgcaacgcctgacctaagagtgatatttat 64
Query: 63 aatagtaataataatattaaacttgcatgacc 94
|||| ||||||||| |||||||||||||||||
Sbjct: 65 aatattaataataacattaaacttgcatgacc 96
>53293_ptc-miRf11471-akr:pmrd
Length = 150
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 51 agtaatatttataatagtaataataatattaaacttgcatga 92
|||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 50 agtaatatttttaatattaataataatattaaacttgcatga 91
>52158_ptc-miRf10336-akr:pmrd
Length = 139
Score = 65.9 bits (33), Expect = 8e-12
Identities = 76/91 (83%), Gaps = 7/91 (7%)
Strand = Plus / Minus
Query: 51 agtaatatttataatagtaataataatattaaacttgcatgacc-------tagtaggtc 103
|||||||||||||||| | ||||||| ||||||||||||||||| ||| ||||
Sbjct: 96 agtaatatttataatatttataataacattaaacttgcatgacccaagtttaagtgggtc 37
Query: 104 tagctccaataccagacccaatagccttgga 134
|| || |||||||||||||||||| ||||||
Sbjct: 36 taactgcaataccagacccaatagtcttgga 6
