miRNEST 2.0, an integrative microRNA resource :: BLAST
>53981_ptc-miRf12159-akr:pmrd
Length = 92
Score = 87.7 bits (44), Expect = 1e-18
Identities = 78/88 (88%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 4 taggtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctca 63
|||||| || || ||||||||||| |||||| ||||||||||||| |||| ||||||||
Sbjct: 4 taggtgatgacccagtggtaagagcttgggaccaagaggtttgctccctctgtggtctca 63
Query: 64 ggttcgagcccta-ggttgctcatatga 90
||||||||||||| ||||||||| ||||
Sbjct: 64 ggttcgagccctatggttgctcacatga 91
>52547_ptc-miRf10725-akr:pmrd
Length = 93
Score = 85.7 bits (43), Expect = 5e-18
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 4 taggtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctca 63
|||||||||| | |||||||| || |||||| |||||||||||| |||| | ||||||
Sbjct: 5 taggtggtggtccagtggtaaaagcctgggatcaagaggtttgcttcctctgtagtctca 64
Query: 64 ggttcgagccctaggttgctcatatga 90
|||||||||||| ||||||||||||||
Sbjct: 65 ggttcgagccctgggttgctcatatga 91
>54124_ptc-miRf12302-akr:pmrd
Length = 81
Score = 81.8 bits (41), Expect = 8e-17
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 7 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 66
||||||||| ||||||||||| |||||| ||||| ||||||| |||| |||||||||||
Sbjct: 1 gtggtggcccagtggtaagagcttgggaccaagagatttgctctctctgtggtctcaggt 60
Query: 67 tcgagccct 75
|||||||||
Sbjct: 61 tcgagccct 69
>52747_ptc-miRf10925-akr:pmrd
Length = 81
Score = 81.8 bits (41), Expect = 8e-17
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 7 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 66
||||||||| |||||||||| ||||||| ||||||||||||| ||| |||||||||||
Sbjct: 1 gtggtggcccagtggtaagaatttgggatcaagaggtttgctctttctgtggtctcaggt 60
Query: 67 tcgagccct 75
|||||||||
Sbjct: 61 tcgagccct 69
>53706_ptc-miRf11884-akr:pmrd
Length = 81
Score = 79.8 bits (40), Expect = 3e-16
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 8 tggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggtt 67
|||||||| ||||||||||| |||||| |||||||||||| |||| ||||||||||||
Sbjct: 2 tggtggcccagtggtaagagcttgggaccaagaggtttgcttcctctgtggtctcaggtt 61
Query: 68 cgagccct 75
||||||||
Sbjct: 62 cgagccct 69
>53982_ptc-miRf12160-akr:pmrd
Length = 81
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 7 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 66
|||||||| ||||||||||| |||||| ||||||||||||| |||| |||||||||||
Sbjct: 1 gtggtggctcagtggtaagagcttgggaccaagaggtttgctccctctgtggtctcaggt 60
Query: 67 tcgagccct 75
|| ||||||
Sbjct: 61 tcaagccct 69
>53107_ptc-miRf11285-akr:pmrd
Length = 81
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 7 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 66
||||||||| ||||||||||| |||||| ||||||||||||| ||| ||||||||| |
Sbjct: 1 gtggtggcccagtggtaagagtttgggaccaagaggtttgctccttctgtggtctcagat 60
Query: 67 tcgagccct 75
|||||||||
Sbjct: 61 tcgagccct 69
>52111_ptc-miRf10289-akr:pmrd
Length = 81
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 7 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 66
||||||||| ||||||||||| |||||| |||| |||||||| |||| |||||||||||
Sbjct: 1 gtggtggcccagtggtaagagcttgggaccaagatgtttgctccctctgtggtctcaggt 60
Query: 67 tcgagccct 75
|| ||||||
Sbjct: 61 tcaagccct 69
>54152_ptc-miRf12330-akr:pmrd
Length = 81
Score = 65.9 bits (33), Expect = 5e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 7 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 66
||||||| | |||||||||| ||||||| ||||||||||||| ||| |||| ||||||
Sbjct: 1 gtggtggtccagtggtaagaacttgggatcaagaggtttgctccctccgtggtttcaggt 60
Query: 67 tcgagccct 75
|||||||||
Sbjct: 61 tcgagccct 69
>53554_ptc-miRf11732-akr:pmrd
Length = 81
Score = 65.9 bits (33), Expect = 5e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 7 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 66
||||||| | ||||||||||| ||||||| |||| ||||| | |||| |||||||||||
Sbjct: 1 gtggtggtccagtggtaagagcttgggatcaagaagtttgttttctctgtggtctcaggt 60
Query: 67 tcgagccct 75
|||||||||
Sbjct: 61 tcgagccct 69
>53986_ptc-miRf12164-akr:pmrd
Length = 81
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 7 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 66
|||||| || |||||||||| ||||||| |||||||||| || |||| |||||| ||||
Sbjct: 1 gtggtgacccagtggtaagaacttgggatcaagaggtttgttccctctgtggtcttaggt 60
Query: 67 tcgagcc 73
|||||||
Sbjct: 61 tcgagcc 67
>53985_ptc-miRf12163-akr:pmrd
Length = 81
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 7 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 66
|||||| || |||||||||| ||||||| |||||||||| || |||| |||||| ||||
Sbjct: 1 gtggtgacccagtggtaagaacttgggatcaagaggtttgttccctctgtggtcttaggt 60
Query: 67 tcgagcc 73
|||||||
Sbjct: 61 tcgagcc 67
>52918_ptc-miRf11096-akr:pmrd
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 17 agtggtaagagattgggataaagaggtttgctcactctatggtctcaggttcgagccct 75
||||||||||| |||||| ||| ||||||||| |||| |||||||||||||| ||||
Sbjct: 11 agtggtaagagcttgggactaaggggtttgctccctcttaggtctcaggttcgaaccct 69
>53367_ptc-miRf11545-akr:pmrd
Length = 126
Score = 52.0 bits (26), Expect = 7e-08
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 4 taggtggtggcctagtggtaagagattgggataaagaggtttgctc 49
|||||||||| | |||||||||| ||||||| |||||||||||||
Sbjct: 48 taggtggtggtccagtggtaagaacttgggatcaagaggtttgctc 3
>52719_ptc-miRf10897-akr:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 7e-08
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 4 taggtggtggcctagtggtaagagattgggataaagaggtttgctc 49
|||||||||| | ||||||||||| |||||| |||||||||||||
Sbjct: 46 taggtggtggtccagtggtaagagcttgggaccaagaggtttgctc 1
>53646_ptc-miRf11824-akr:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 4 taggtggtggcctagtggtaagagattgggataaagaggtt 44
|||||||||| | ||||||||||| |||||| ||||||||
Sbjct: 69 taggtggtggtccagtggtaagagcttgggaccaagaggtt 109
