miRNEST 2.0, an integrative microRNA resource :: BLAST
>53981_ptc-miRf12159-akr:pmrd
Length = 92
Score = 83.8 bits (42), Expect = 2e-17
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 12 agtggtaagagattgggataaagaggtttgctcactctatggtctcaggttcgagcccta 71
||||||||||| |||||| ||||||||||||| |||| |||||||||||||||||||||
Sbjct: 17 agtggtaagagcttgggaccaagaggtttgctccctctgtggtctcaggttcgagcccta 76
Query: 72 -ggttgctca 80
|||||||||
Sbjct: 77 tggttgctca 86
>54124_ptc-miRf12302-akr:pmrd
Length = 81
Score = 81.8 bits (41), Expect = 7e-17
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 2 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 61
||||||||| ||||||||||| |||||| ||||| ||||||| |||| |||||||||||
Sbjct: 1 gtggtggcccagtggtaagagcttgggaccaagagatttgctctctctgtggtctcaggt 60
Query: 62 tcgagccct 70
|||||||||
Sbjct: 61 tcgagccct 69
>52747_ptc-miRf10925-akr:pmrd
Length = 81
Score = 81.8 bits (41), Expect = 7e-17
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 2 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 61
||||||||| |||||||||| ||||||| ||||||||||||| ||| |||||||||||
Sbjct: 1 gtggtggcccagtggtaagaatttgggatcaagaggtttgctctttctgtggtctcaggt 60
Query: 62 tcgagccct 70
|||||||||
Sbjct: 61 tcgagccct 69
>53706_ptc-miRf11884-akr:pmrd
Length = 81
Score = 79.8 bits (40), Expect = 3e-16
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 3 tggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggtt 62
|||||||| ||||||||||| |||||| |||||||||||| |||| ||||||||||||
Sbjct: 2 tggtggcccagtggtaagagcttgggaccaagaggtttgcttcctctgtggtctcaggtt 61
Query: 63 cgagccct 70
||||||||
Sbjct: 62 cgagccct 69
>53982_ptc-miRf12160-akr:pmrd
Length = 81
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 2 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 61
|||||||| ||||||||||| |||||| ||||||||||||| |||| |||||||||||
Sbjct: 1 gtggtggctcagtggtaagagcttgggaccaagaggtttgctccctctgtggtctcaggt 60
Query: 62 tcgagccct 70
|| ||||||
Sbjct: 61 tcaagccct 69
>53107_ptc-miRf11285-akr:pmrd
Length = 81
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 2 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 61
||||||||| ||||||||||| |||||| ||||||||||||| ||| ||||||||| |
Sbjct: 1 gtggtggcccagtggtaagagtttgggaccaagaggtttgctccttctgtggtctcagat 60
Query: 62 tcgagccct 70
|||||||||
Sbjct: 61 tcgagccct 69
>52111_ptc-miRf10289-akr:pmrd
Length = 81
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 2 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 61
||||||||| ||||||||||| |||||| |||| |||||||| |||| |||||||||||
Sbjct: 1 gtggtggcccagtggtaagagcttgggaccaagatgtttgctccctctgtggtctcaggt 60
Query: 62 tcgagccct 70
|| ||||||
Sbjct: 61 tcaagccct 69
>52547_ptc-miRf10725-akr:pmrd
Length = 93
Score = 71.9 bits (36), Expect = 6e-14
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 1 ggtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcagg 60
|||||||| | |||||||| || |||||| |||||||||||| |||| | ||||||||
Sbjct: 7 ggtggtggtccagtggtaaaagcctgggatcaagaggtttgcttcctctgtagtctcagg 66
Query: 61 ttcgagccctaggttgctca 80
|||||||||| |||||||||
Sbjct: 67 ttcgagccctgggttgctca 86
>54152_ptc-miRf12330-akr:pmrd
Length = 81
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 2 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 61
||||||| | |||||||||| ||||||| ||||||||||||| ||| |||| ||||||
Sbjct: 1 gtggtggtccagtggtaagaacttgggatcaagaggtttgctccctccgtggtttcaggt 60
Query: 62 tcgagccct 70
|||||||||
Sbjct: 61 tcgagccct 69
>53554_ptc-miRf11732-akr:pmrd
Length = 81
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 2 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 61
||||||| | ||||||||||| ||||||| |||| ||||| | |||| |||||||||||
Sbjct: 1 gtggtggtccagtggtaagagcttgggatcaagaagtttgttttctctgtggtctcaggt 60
Query: 62 tcgagccct 70
|||||||||
Sbjct: 61 tcgagccct 69
>53986_ptc-miRf12164-akr:pmrd
Length = 81
Score = 61.9 bits (31), Expect = 6e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 2 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 61
|||||| || |||||||||| ||||||| |||||||||| || |||| |||||| ||||
Sbjct: 1 gtggtgacccagtggtaagaacttgggatcaagaggtttgttccctctgtggtcttaggt 60
Query: 62 tcgagcc 68
|||||||
Sbjct: 61 tcgagcc 67
>53985_ptc-miRf12163-akr:pmrd
Length = 81
Score = 61.9 bits (31), Expect = 6e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 2 gtggtggcctagtggtaagagattgggataaagaggtttgctcactctatggtctcaggt 61
|||||| || |||||||||| ||||||| |||||||||| || |||| |||||| ||||
Sbjct: 1 gtggtgacccagtggtaagaacttgggatcaagaggtttgttccctctgtggtcttaggt 60
Query: 62 tcgagcc 68
|||||||
Sbjct: 61 tcgagcc 67
>52918_ptc-miRf11096-akr:pmrd
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 12 agtggtaagagattgggataaagaggtttgctcactctatggtctcaggttcgagccct 70
||||||||||| |||||| ||| ||||||||| |||| |||||||||||||| ||||
Sbjct: 11 agtggtaagagcttgggactaaggggtttgctccctcttaggtctcaggttcgaaccct 69
>53367_ptc-miRf11545-akr:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 9e-07
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1 ggtggtggcctagtggtaagagattgggataaagaggtttgctc 44
|||||||| | |||||||||| ||||||| |||||||||||||
Sbjct: 46 ggtggtggtccagtggtaagaacttgggatcaagaggtttgctc 3
>52719_ptc-miRf10897-akr:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 9e-07
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1 ggtggtggcctagtggtaagagattgggataaagaggtttgctc 44
|||||||| | ||||||||||| |||||| |||||||||||||
Sbjct: 44 ggtggtggtccagtggtaagagcttgggaccaagaggtttgctc 1
>53646_ptc-miRf11824-akr:pmrd
Length = 109
Score = 38.2 bits (19), Expect = 9e-04
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 1 ggtggtggcctagtggtaagagattgggataaagaggtt 39
|||||||| | ||||||||||| |||||| ||||||||
Sbjct: 71 ggtggtggtccagtggtaagagcttgggaccaagaggtt 109
