miRNEST 2.0, an integrative microRNA resource :: BLAST
>54375_pts-miR168b:pmrd
Length = 140
Score = 97.6 bits (49), Expect = 3e-21
Identities = 70/73 (95%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 15 tcgcttggtgcagcgtcgggaactgattcggcgatttgattgcgcacgctggctggacat 74
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1 tcgcttggtgcag-gtcgggaactgattcggcgatttgattgc-ca-gctggctggacat 57
Query: 75 gactggttgttat 87
|||||||||||||
Sbjct: 58 gactggttgttat 70
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 126 tagcgaattggatcccgccttgcatcaactga 157
||||||||||||||||||||||||||||||||
Sbjct: 109 tagcgaattggatcccgccttgcatcaactga 140
>51650_ptc-miR168a:pmrd
Length = 160
Score = 97.6 bits (49), Expect = 3e-21
Identities = 76/81 (93%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 5 ggtctctgattcgcttggtgcagcgtcgggaactgattcggcgatttgattgcgcacgct 64
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | |
Sbjct: 1 ggtctctgattcgcttggtgcag-gtcgggaactgattcggcgatttgattgc-ca-gat 57
Query: 65 ggctggacatgactggttgtt 85
|||| ||||||||||||||||
Sbjct: 58 ggctcgacatgactggttgtt 78
Score = 79.8 bits (40), Expect = 6e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 126 tagcgaattggatcccgccttgcatcaactgaatcggagg 165
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagcgaattggatcccgccttgcatcaactgaatcggagg 160
>48560_gma-miR168:pmrd
Length = 125
Score = 83.8 bits (42), Expect = 4e-17
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 129 cgaattggatcccgccttgcatcaactgaatcggaggccgcg 170
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 cgaattggatcccgccttgcatcaactgaatcggaggccgcg 119
Score = 46.1 bits (23), Expect = 9e-06
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 3 gcggtctctgattcgcttggtgcagcgtcgggaac 37
||||||||| ||||||||||||||| |||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcag-gtcgggaac 40
>51651_ptc-miR168b:pmrd
Length = 136
Score = 81.8 bits (41), Expect = 2e-16
Identities = 51/53 (96%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 5 ggtctctgattcgcttggtgcagcgtcgggaactgattcggcgatttgattgc 57
||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcag-gtcgggaactgattcggcgatttgattgc 52
Score = 69.9 bits (35), Expect = 6e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 130 gaattggatcccgccttgcatcaactgaatcggag 164
|||||||||||||||||||||||||||||||||||
Sbjct: 101 gaattggatcccgccttgcatcaactgaatcggag 135
>54388_rco-miR168:pmrd
Length = 156
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 130 gaattggatcccgccttgcatcaactgaatcg 161
||||||||||||||||||||||||||||||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcg 141
Score = 60.0 bits (30), Expect = 6e-10
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 1 cggcggtctctgattcgcttggtgcagcgtcgggaactgatt 42
||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 5 cggcggtctctaattcgcttggtgcag-gtcgggaactgatt 45
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 132 attggatcccgccttgcatcaactgaatcgga 163
||||||||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatcgga 122
>46957_ath-miR168a:pmrd
Length = 138
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 132 attggatcccgccttgcatcaactgaatcgga 163
||||||||||||||||||||||||||||||||
Sbjct: 96 attggatcccgccttgcatcaactgaatcgga 127
>46958_ath-miR168b:pmrd
Length = 124
Score = 60.0 bits (30), Expect = 6e-10
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 1 cggcggtctctgattcgcttggtgcagcgtcgggaactgatt 42
|||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcag-gtcgggaactgatt 45
>54802_vvi-miR168:pmrd
Length = 132
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 136 gatcccgccttgcatcaactgaatcggag 164
|||||||||||||||||||||||||||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggag 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 5 ggtctctgattcgcttggtgcagcgtcgggaac 37
||||||| ||||||||||||||| |||||||||
Sbjct: 1 ggtctctaattcgcttggtgcag-gtcgggaac 32
>54374_pts-miR168a:pmrd
Length = 118
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 130 gaattggatcccgccttgcatcaactga 157
||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactga 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 40/43 (93%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 15 tcgcttggtgcagcgtcgggaactgattcggcgatttgattgc 57
||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct: 1 tcgcttggtgcag-gtcgggaactgattctgcgatttcattgc 42
>54366_ptr-miR168:pmrd
Length = 118
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 130 gaattggatcccgccttgcatcaactga 157
||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactga 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 40/43 (93%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 15 tcgcttggtgcagcgtcgggaactgattcggcgatttgattgc 57
||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct: 1 tcgcttggtgcag-gtcgggaactgattctgcgatttcattgc 42
>55000_zma-miR168b:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 135 ggatcccgccttgcatcaactgaatcggag 164
||||||||||||||||||| ||||||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcggag 92
>48349_bna-miR168:pmrd
Length = 133
Score = 52.0 bits (26), Expect = 1e-07
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 1 cggcggtctctgattcgcttggtgcagcgtcgggaactgatt 42
|||||| |||||| ||||||||||||| ||||||||||||||
Sbjct: 4 cggcggcctctgactcgcttggtgcag-gtcgggaactgatt 44
>46959_ath-miR168m:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 132 attggatcccgccttgcatcaactga 157
||||||||||||||||||||||||||
Sbjct: 79 attggatcccgccttgcatcaactga 104
>54999_zma-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 135 ggatcccgccttgcatcaactgaatcggag 164
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>54637_sof-miR168b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 135 ggatcccgccttgcatcaactgaatcggag 164
||||||||||||||| ||| ||||||||||
Sbjct: 62 ggatcccgccttgcaccaagtgaatcggag 91
>54636_sof-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 135 ggatcccgccttgcatcaactgaatcggag 164
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>48873_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 135 ggatcccgccttgcatcaactgaatcggag 164
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48872_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 135 ggatcccgccttgcatcaactgaatcggag 164
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48871_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 135 ggatcccgccttgcatcaactgaatcggag 164
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>54665_stu-miR168:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 133 ttggatcccgccttgcatcaactga 157
|||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133
