miRNEST 2.0, an integrative microRNA resource :: BLAST
>51735_ptc-miR396b:pmrd
Length = 132
Score = 254 bits (128), Expect = 2e-68
Identities = 131/132 (99%)
Strand = Plus / Plus
Query: 12 ctttgtattcttccacagctttcttgaactgcacctattagatttatgttgatgttgttg 71
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcacctattagattaatgttgatgttgttg 60
Query: 72 tgcgatatgccatgaccatatgacattgtattcatttttgctgcggttcaataaagctgt 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgcgatatgccatgaccatatgacattgtattcatttttgctgcggttcaataaagctgt 120
Query: 132 gggaagatacaa 143
||||||||||||
Sbjct: 121 gggaagatacaa 132
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 250 bits (126), Expect = 3e-67
Identities = 129/130 (99%)
Strand = Plus / Plus
Query: 14 ttgtattcttccacagctttcttgaactgcacctattagatttatgttgatgttgttgtg 73
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 ttgtattcttccacagctttcttgaactgcacctattagattaatgttgatgttgttgtg 60
Query: 74 cgatatgccatgaccatatgacattgtattcatttttgctgcggttcaataaagctgtgg 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgatatgccatgaccatatgacattgtattcatttttgctgcggttcaataaagctgtgg 120
Query: 134 gaagatacaa 143
||||||||||
Sbjct: 121 gaagatacaa 130
>51734_ptc-miR396a:pmrd
Length = 123
Score = 81.8 bits (41), Expect = 1e-16
Identities = 109/128 (85%), Gaps = 9/128 (7%)
Strand = Plus / Plus
Query: 16 gtattcttccacagctttcttgaactgcacctattagatttatgttgatgttgttgtgcg 75
||||||||||||||||||||||||||||||||||| || | ||||| || ||||| ||
Sbjct: 5 gtattcttccacagctttcttgaactgcacctatttgaatattgttgttgatgttg-ccg 63
Query: 76 atatgccatgaccatatgacattgtattcatttttgctgcggttcaataaagctgtggga 135
|| |||| ||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 64 ---tg-catgtacatatgacattgt----atttttgttgcggttcaataaagctgtggga 115
Query: 136 agatacaa 143
||||||||
Sbjct: 116 agatacaa 123
>54871_vvi-miR396d:pmrd
Length = 120
Score = 65.9 bits (33), Expect = 8e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 12 ctttgtattcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 113 tgcggttcaataaagctgtgggaagatacaaacag 147
||||||||||||||||||||||||||||| |||||
Sbjct: 86 tgcggttcaataaagctgtgggaagataccaacag 120
>48680_lja-miR396:pmrd
Length = 108
Score = 65.9 bits (33), Expect = 8e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 12 ctttgtattcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||||||||||
Sbjct: 6 ctttgtattcttccacagctttcttgaactgca 38
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 113 tgcggttcaataaagctgtgggaagata 140
||||||||||||||||||||||||||||
Sbjct: 72 tgcggttcaataaagctgtgggaagata 99
>48578_gma-miR396a:pmrd
Length = 140
Score = 65.9 bits (33), Expect = 8e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 12 ctttgtattcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||||||||||
Sbjct: 11 ctttgtattcttccacagctttcttgaactgca 43
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 113 tgcggttcaataaagctgtgggaagataca 142
||||||||||||||||||||||||||||||
Sbjct: 99 tgcggttcaataaagctgtgggaagataca 128
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 5 tgaccccctttgtattcttccacagctttcttgaactgca 44
|||||| || ||||||||||||||||||||||||||||||
Sbjct: 1 tgaccctctctgtattcttccacagctttcttgaactgca 40
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 113 tgcggttcaataaagctgtgggaagatacaaacag 147
|||||||||||||||||||||||||||||| ||||
Sbjct: 126 tgcggttcaataaagctgtgggaagatacagacag 160
>47008_ath-miR396a:pmrd
Length = 151
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 15 tgtattcttccacagctttcttgaactgca 44
||||||||||||||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgca 33
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 113 tgcggttcaataaagctgtgggaagataca 142
||||||||||||||||||||||||||||||
Sbjct: 119 tgcggttcaataaagctgtgggaagataca 148
>48945_osa-miR396a:pmrd
Length = 154
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgcac 45
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcac 34
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117 gttcaataaagctgtgggaa 136
||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145
>55079_zma-miR396h:pmrd
Length = 116
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgca 26
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117 gttcaataaagctgtgggaa 136
||||||||||||||||||||
Sbjct: 95 gttcaataaagctgtgggaa 114
>55074_zma-miR396c:pmrd
Length = 104
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgca 26
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117 gttcaataaagctgtgggaa 136
||||||||||||||||||||
Sbjct: 83 gttcaataaagctgtgggaa 102
>55073_zma-miR396b:pmrd
Length = 136
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117 gttcaataaagctgtgggaa 136
||||||||||||||||||||
Sbjct: 99 gttcaataaagctgtgggaa 118
>55072_zma-miR396a:pmrd
Length = 137
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117 gttcaataaagctgtgggaa 136
||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119
>54645_sof-miR396:pmrd
Length = 134
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 24 ccacagctttcttgaactgcacct 47
|||||||||| |||||||||||||
Sbjct: 113 ccacagctttattgaactgcacct 90
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117 gttcaataaagctgtgggaa 136
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>54486_sbi-miR396b:pmrd
Length = 128
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 24 ccacagctttcttgaactgcacct 47
|||||||||| |||||||||||||
Sbjct: 107 ccacagctttattgaactgcacct 84
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117 gttcaataaagctgtgggaa 136
||||||||||||||||||||
Sbjct: 91 gttcaataaagctgtgggaa 110
>54485_sbi-miR396a:pmrd
Length = 125
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117 gttcaataaagctgtgggaa 136
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>48946_osa-miR396b:pmrd
Length = 116
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117 gttcaataaagctgtgggaa 136
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>46887_aqc-miR396a:pmrd
Length = 122
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 113 tgcggttcaataaagctgtgggaa 136
||||||||||||||||||||||||
Sbjct: 98 tgcggttcaataaagctgtgggaa 121
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaactgca 44
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>55083_zma-miR396l:pmrd
Length = 97
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaactgca 44
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>55081_zma-miR396j:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaactgca 44
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>55080_zma-miR396i:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaactgca 44
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>54870_vvi-miR396c:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactg 42
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>48508_ghr-miR396c:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaactgca 44
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgcggttcaataaagctgtggga 135
|||||||||||||||||||||||
Sbjct: 93 tgcggttcaataaagctgtggga 115
>48507_ghr-miR396b:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaactgca 44
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgcggttcaataaagctgtggga 135
|||||||||||||||||||||||
Sbjct: 93 tgcggttcaataaagctgtggga 115
>48486_gcl-miR396b:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgcggttcaataaagctgtggga 135
|||||||||||||||||||||||
Sbjct: 79 tgcggttcaataaagctgtggga 101
>48485_gcl-miR396a:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 113 tgcggttcaataaagctgtggga 135
|||||||||||||||||||||||
Sbjct: 23 tgcggttcaataaagctgtggga 1
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 22 ttccacagctttcttgaactgca 44
|||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgca 79
>55082_zma-miR396k:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaactgc 43
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
