miRNEST 2.0, an integrative microRNA resource :: BLAST
>51735_ptc-miR396b:pmrd
Length = 132
Score = 230 bits (116), Expect = 3e-61
Identities = 128/132 (96%)
Strand = Plus / Plus
Query: 22 ctttgtattcttccacagctttcttgaactgcacctattagatttatgttgatgttgttg 81
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcacctattagattaatgttgatgttgttg 60
Query: 82 tgcgatatgccatgaccatatgacattgtattcatttttgctgcggatcaataaaactgg 141
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 61 tgcgatatgccatgaccatatgacattgtattcatttttgctgcggttcaataaagctgt 120
Query: 142 gggaagatacaa 153
||||||||||||
Sbjct: 121 gggaagatacaa 132
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 226 bits (114), Expect = 4e-60
Identities = 126/130 (96%)
Strand = Plus / Plus
Query: 24 ttgtattcttccacagctttcttgaactgcacctattagatttatgttgatgttgttgtg 83
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 ttgtattcttccacagctttcttgaactgcacctattagattaatgttgatgttgttgtg 60
Query: 84 cgatatgccatgaccatatgacattgtattcatttttgctgcggatcaataaaactgggg 143
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct: 61 cgatatgccatgaccatatgacattgtattcatttttgctgcggttcaataaagctgtgg 120
Query: 144 gaagatacaa 153
||||||||||
Sbjct: 121 gaagatacaa 130
>48680_lja-miR396:pmrd
Length = 108
Score = 71.9 bits (36), Expect = 2e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 19 cctctttgtattcttccacagctttcttgaactgca 54
||||||||||||||||||||||||||||||||||||
Sbjct: 3 cctctttgtattcttccacagctttcttgaactgca 38
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 71.9 bits (36), Expect = 2e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 15 tgaccctctttgtattcttccacagctttcttgaactgca 54
||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 tgaccctctctgtattcttccacagctttcttgaactgca 40
>51734_ptc-miR396a:pmrd
Length = 123
Score = 69.9 bits (35), Expect = 6e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 26 gtattcttccacagctttcttgaactgcacctatt 60
|||||||||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgcacctatt 39
>48578_gma-miR396a:pmrd
Length = 140
Score = 69.9 bits (35), Expect = 6e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 20 ctctttgtattcttccacagctttcttgaactgca 54
|||||||||||||||||||||||||||||||||||
Sbjct: 9 ctctttgtattcttccacagctttcttgaactgca 43
>54871_vvi-miR396d:pmrd
Length = 120
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 22 ctttgtattcttccacagctttcttgaactgca 54
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
>47008_ath-miR396a:pmrd
Length = 151
Score = 60.0 bits (30), Expect = 6e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 25 tgtattcttccacagctttcttgaactgca 54
||||||||||||||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgca 33
>55073_zma-miR396b:pmrd
Length = 136
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 21 tctttgtattcttccacagctttcttgaactgca 54
||||||| |||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgca 43
>54645_sof-miR396:pmrd
Length = 134
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 21 tctttgtattcttccacagctttcttgaactgca 54
||||||| |||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgca 43
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 34 ccacagctttcttgaactgcacct 57
|||||||||| |||||||||||||
Sbjct: 113 ccacagctttattgaactgcacct 90
>54486_sbi-miR396b:pmrd
Length = 128
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 21 tctttgtattcttccacagctttcttgaactgca 54
||||||| |||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgca 43
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 34 ccacagctttcttgaactgcacct 57
|||||||||| |||||||||||||
Sbjct: 107 ccacagctttattgaactgcacct 84
>48945_osa-miR396a:pmrd
Length = 154
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 30 tcttccacagctttcttgaactgcac 55
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcac 34
>55079_zma-miR396h:pmrd
Length = 116
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 tcttccacagctttcttgaactgca 54
|||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgca 26
>55074_zma-miR396c:pmrd
Length = 104
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 tcttccacagctttcttgaactgca 54
|||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgca 26
>55072_zma-miR396a:pmrd
Length = 137
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 tcttccacagctttcttgaactgca 54
|||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43
>54485_sbi-miR396a:pmrd
Length = 125
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 tcttccacagctttcttgaactgca 54
|||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgca 43
>48946_osa-miR396b:pmrd
Length = 116
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 tcttccacagctttcttgaactgca 54
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
>55083_zma-miR396l:pmrd
Length = 97
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaactgca 54
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>55081_zma-miR396j:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaactgca 54
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>55080_zma-miR396i:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaactgca 54
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>54870_vvi-miR396c:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tcttccacagctttcttgaactg 52
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>48508_ghr-miR396c:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaactgca 54
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48507_ghr-miR396b:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaactgca 54
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48485_gcl-miR396a:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 32 ttccacagctttcttgaactgca 54
|||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgca 79
>46887_aqc-miR396a:pmrd
Length = 122
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaactgca 54
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>55082_zma-miR396k:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaactgc 53
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32 ttccacagctttcttgaact 51
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
