miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53561_ptc-miRf11739-akr:pmrd
Length = 92
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 19 atcagcaacggatattccgttgctaatcagcaatg 53
|||||||||| ||||||||||||| ||||||||||
Sbjct: 21 atcagcaacgaatattccgttgctgatcagcaatg 55
>53562_ptc-miRf11740-akr:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 23 gcaacggatattccgttgctaatcagcaatg 53
|||||| ||||||||||||| ||||||||||
Sbjct: 1 gcaacgaatattccgttgctgatcagcaatg 31
>53344_ptc-miRf11522-akr:pmrd
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 23 gcaacggatattccgttgctaatcagcaa 51
|||||||||||||| ||||| ||||||||
Sbjct: 1 gcaacggatattccattgctgatcagcaa 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 agcaatggaatatccgttgc 79
||||||||||||||||||||
Sbjct: 20 agcaatggaatatccgttgc 1
>53343_ptc-miRf11521-akr:pmrd
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 23 gcaacggatattccgttgctaatcagcaa 51
|||||||||||||| ||||| ||||||||
Sbjct: 1 gcaacggatattccattgctgatcagcaa 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 agcaatggaatatccgttgc 79
||||||||||||||||||||
Sbjct: 20 agcaatggaatatccgttgc 1
