miRNEST 2.0, an integrative microRNA resource :: BLAST
>51807_ptc-miR530b:pmrd
Length = 172
Score = 276 bits (139), Expect = 6e-75
Identities = 172/186 (92%), Gaps = 14/186 (7%)
Strand = Plus / Plus
Query: 8 gccaatatgttgcctttatctgcatttgcacctgcatcttttgcgtttgttttgtttttg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccaatatgttgcctttatctgcatttgcacctgcatcttttgcgtttgttttgtttttg 60
Query: 68 actccacaaacaaaatcaagttctgtcgatacagtatgtgggacaattagatatagagtg 127
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actccacaaacaaaatcaagttctgtcgatacagtatgtgggacaa-------------- 106
Query: 128 ttagatatggaaactaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccat 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ttagatatggaaactaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccat 166
Query: 188 tttggt 193
||||||
Sbjct: 167 tttggt 172
>53341_ptc-miRf11519-akr:pmrd
Length = 152
Score = 236 bits (119), Expect = 5e-63
Identities = 152/166 (91%), Gaps = 14/166 (8%)
Strand = Plus / Plus
Query: 19 gcctttatctgcatttgcacctgcatcttttgcgtttgttttgtttttgactccacaaac 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcctttatctgcatttgcacctgcatcttttgcgtttgttttgtttttgactccacaaac 60
Query: 79 aaaatcaagttctgtcgatacagtatgtgggacaattagatatagagtgttagatatgga 138
||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 aaaatcaagttctgtcgatacagtatgtgggacaa--------------ttagatatgga 106
Query: 139 aactaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgc 184
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 aactaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgc 152
>51806_ptc-miR530a:pmrd
Length = 144
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 8 gccaatatgttgcctttatctgcatttgcacctgca 43
||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gccaacatgttgcctttatctgcatttgcacctgca 36
Score = 63.9 bits (32), Expect = 4e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 154 ttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 193
|||||||||||||||| ||||||||||||||||| |||||
Sbjct: 105 ttgaggtgcaggtgcaggtgcaggtgaatgccatgttggt 144
>52847_ptc-miRf11025-akr:pmrd
Length = 138
Score = 60.0 bits (30), Expect = 7e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 atgttgcctttatctgcatttgcacctgca 43
||||||||||||||||||||||||||||||
Sbjct: 4 atgttgcctttatctgcatttgcacctgca 33
Score = 60.0 bits (30), Expect = 7e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 154 ttgaggtgcaggtgcaagtgcaggtgaatgccat 187
|||||||||||||||| |||||||||||||||||
Sbjct: 102 ttgaggtgcaggtgcaggtgcaggtgaatgccat 135
>52848_ptc-miRf11026-akr:pmrd
Length = 124
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 154 ttgaggtgcaggtgcaagtgcaggtgaatgc 184
|||||||||||||||| ||||||||||||||
Sbjct: 94 ttgaggtgcaggtgcaggtgcaggtgaatgc 124
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 gcctttatctgcatttgcacctgca 43
|||||||||||||||||||||||||
Sbjct: 1 gcctttatctgcatttgcacctgca 25
>51904_ptc-miRf10082-akr:pmrd
Length = 118
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 154 ttgaggtgcaggtgcaagtgcaggtgaa 181
|||||||||||||||| |||||||||||
Sbjct: 91 ttgaggtgcaggtgcaggtgcaggtgaa 118
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tttatctgcatttgcacctgca 43
||||||||||||||||||||||
Sbjct: 1 tttatctgcatttgcacctgca 22
>46904_aqc-miR530:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 26 tctgcatttgcacctgcatct 46
|||||||||||||||||||||
Sbjct: 10 tctgcatttgcacctgcatct 30
