miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>48578_gma-miR396a:pmrd
          Length = 140

 Score = 77.8 bits (39), Expect = 2e-15
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                 
Query: 18 ctctttgtattcttccacagctttcttgaactgcatcca 56
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 9  ctctttgtattcttccacagctttcttgaactgcatcca 47



 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                     
Query: 119 ttgcgggtcaataaagctgtgggaagatacagataggctcaa 160
           |||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 98  ttgcggttcaataaagctgtgggaagatacagatagggtcaa 139




>48680_lja-miR396:pmrd
          Length = 108

 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 16 tcctctttgtattcttccacagctttcttgaactgcat 53
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcctctttgtattcttccacagctttcttgaactgcat 39



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 119 ttgcgggtcaataaagctgtgggaagatacagatagg 155
           |||||| |||||||||||||||||||||| |||||||
Sbjct: 71  ttgcggttcaataaagctgtgggaagatatagatagg 107




>54871_vvi-miR396d:pmrd
          Length = 120

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 20 ctttgtattcttccacagctttcttgaactgcat 53
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcat 34



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 119 ttgcgggtcaataaagctgtgggaagatac 148
           |||||| |||||||||||||||||||||||
Sbjct: 85  ttgcggttcaataaagctgtgggaagatac 114




>51735_ptc-miR396b:pmrd
          Length = 132

 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 20 ctttgtattcttccacagctttcttgaactgca 52
          |||||||||||||||||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgca 33



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 120 tgcgggtcaataaagctgtgggaagataca 149
           ||||| ||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagataca 131




>48110_ath-miRf11010-akr:pmrd
          Length = 165

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 17 cctctttgtattcttccacagctttcttgaactgca 52
          ||||| ||||||||||||||||||||||||||||||
Sbjct: 5  cctctctgtattcttccacagctttcttgaactgca 40



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 119 ttgcgggtcaataaagctgtgggaagatacaga 151
           |||||| ||||||||||||||||||||||||||
Sbjct: 125 ttgcggttcaataaagctgtgggaagatacaga 157




>52079_ptc-miRf10257-akr:pmrd
          Length = 130

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 22 ttgtattcttccacagctttcttgaactgca 52
          |||||||||||||||||||||||||||||||
Sbjct: 1  ttgtattcttccacagctttcttgaactgca 31



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 120 tgcgggtcaataaagctgtgggaagataca 149
           ||||| ||||||||||||||||||||||||
Sbjct: 100 tgcggttcaataaagctgtgggaagataca 129




>47008_ath-miR396a:pmrd
          Length = 151

 Score = 60.0 bits (30), Expect = 6e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 23 tgtattcttccacagctttcttgaactgca 52
          ||||||||||||||||||||||||||||||
Sbjct: 4  tgtattcttccacagctttcttgaactgca 33



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 119 ttgcgggtcaataaagctgtgggaagatacaga 151
           |||||| ||||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagatacaga 150




>51734_ptc-miR396a:pmrd
          Length = 123

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 24 gtattcttccacagctttcttgaactgca 52
          |||||||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 119 ttgcgggtcaataaagctgtgggaagataca 149
           |||||| ||||||||||||||||||||||||
Sbjct: 92  ttgcggttcaataaagctgtgggaagataca 122




>55073_zma-miR396b:pmrd
          Length = 136

 Score = 56.0 bits (28), Expect = 9e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 19 tctttgtattcttccacagctttcttgaactgcatc 54
          |||||||  |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45




>54645_sof-miR396:pmrd
          Length = 134

 Score = 56.0 bits (28), Expect = 9e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 19 tctttgtattcttccacagctttcttgaactgcatc 54
          |||||||  |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45




>54486_sbi-miR396b:pmrd
          Length = 128

 Score = 56.0 bits (28), Expect = 9e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 19 tctttgtattcttccacagctttcttgaactgcatc 54
          |||||||  |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45




>48485_gcl-miR396a:pmrd
          Length = 101

 Score = 56.0 bits (28), Expect = 9e-09
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 30  ttccacagctttcttgaactgcatccat 57
           ||||||||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcatccat 74



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 119 ttgcgggtcaataaagctgtggga 142
           |||||| |||||||||||||||||
Sbjct: 24  ttgcggttcaataaagctgtggga 1




>55079_zma-miR396h:pmrd
          Length = 116

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 28 tcttccacagctttcttgaactgcatc 54
          |||||||||||||||||||||||||||
Sbjct: 2  tcttccacagctttcttgaactgcatc 28




>48946_osa-miR396b:pmrd
          Length = 116

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 28 tcttccacagctttcttgaactgcatc 54
          |||||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcatc 35




>55074_zma-miR396c:pmrd
          Length = 104

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 28 tcttccacagctttcttgaactgcat 53
          ||||||||||||||||||||||||||
Sbjct: 2  tcttccacagctttcttgaactgcat 27




>55072_zma-miR396a:pmrd
          Length = 137

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 28 tcttccacagctttcttgaactgcat 53
          ||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44




>54485_sbi-miR396a:pmrd
          Length = 125

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 28 tcttccacagctttcttgaactgcat 53
          ||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44




>55083_zma-miR396l:pmrd
          Length = 97

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 30 ttccacagctttcttgaactgcatc 54
          |||||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25




>48945_osa-miR396a:pmrd
          Length = 154

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 28 tcttccacagctttcttgaactgca 52
          |||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgca 33




>55081_zma-miR396j:pmrd
          Length = 98

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 30 ttccacagctttcttgaactgcat 53
          ||||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24




>55080_zma-miR396i:pmrd
          Length = 103

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 30 ttccacagctttcttgaactgcat 53
          ||||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24




>48486_gcl-miR396b:pmrd
          Length = 101

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 30 ttccacagctttcttgaactgcatccat 57
          ||||| ||||||||||||||||||||||
Sbjct: 1  ttccatagctttcttgaactgcatccat 28



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 119 ttgcgggtcaataaagctgtggga 142
           |||||| |||||||||||||||||
Sbjct: 78  ttgcggttcaataaagctgtggga 101




>46887_aqc-miR396a:pmrd
          Length = 122

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 30 ttccacagctttcttgaactgcat 53
          ||||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 119 ttgcgggtcaataaagctgtgggaa 143
           |||||| ||||||||||||||||||
Sbjct: 97  ttgcggttcaataaagctgtgggaa 121




>54870_vvi-miR396c:pmrd
          Length = 108

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 28 tcttccacagctttcttgaactg 50
          |||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactg 31




>48508_ghr-miR396c:pmrd
          Length = 115

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 ttccacagctttcttgaactgca 52
          |||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgca 23



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 119 ttgcgggtcaataaagctgtggga 142
           |||||| |||||||||||||||||
Sbjct: 92  ttgcggttcaataaagctgtggga 115




>48507_ghr-miR396b:pmrd
          Length = 115

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 ttccacagctttcttgaactgca 52
          |||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgca 23



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 119 ttgcgggtcaataaagctgtggga 142
           |||||| |||||||||||||||||
Sbjct: 92  ttgcggttcaataaagctgtggga 115




>55082_zma-miR396k:pmrd
          Length = 98

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 ttccacagctttcttgaactgc 51
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgc 22




>55078_zma-miR396g:pmrd
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 3  ttccacagctttcttgaact 22




>55077_zma-miR396f:pmrd
          Length = 166

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 3  ttccacagctttcttgaact 22




>54869_vvi-miR396b:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33




>54868_vvi-miR396a:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33




>54487_sbi-miR396c:pmrd
          Length = 162

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>53179_ptc-miRf11357-akr:pmrd
          Length = 141

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 30  ttccacagctttcttgaact 49
           ||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115




>52893_ptc-miRf11071-akr:pmrd
          Length = 148

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 30  ttccacagctttcttgaact 49
           ||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123




>52304_ptc-miRf10482-akr:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74




>52080_ptc-miRf10258-akr:pmrd
          Length = 141

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 30  ttccacagctttcttgaact 49
           ||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115




>51738_ptc-miR396e:pmrd
          Length = 145

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51737_ptc-miR396d:pmrd
          Length = 154

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51736_ptc-miR396c:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51564_pta-miR396:pmrd
          Length = 119

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36




>48947_osa-miR396c:pmrd
          Length = 141

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48748_mtr-miR396a:pmrd
          Length = 93

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaact 25




>48580_gma-miR396c:pmrd
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>48579_gma-miR396b:pmrd
          Length = 126

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>48374_bna-miR396a:pmrd
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>47009_ath-miR396b:pmrd
          Length = 135

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>46888_aqc-miR396b:pmrd
          Length = 89

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 30 ttccacagctttcttgaact 49
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20