miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46909_ata-miR1122:pmrd
Length = 170
Score = 117 bits (59), Expect = 2e-27
Identities = 105/119 (88%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 15 atactccctccgtccggaaatatttgtctaagagatagatgtatctagacgtattttagt 74
|||||||||||||||| || |||||||| ||| || |||||||||||||||||||||||
Sbjct: 25 atactccctccgtccgaaattatttgtcggagaaatggatgtatctagacgtattttagt 84
Query: 75 tctagatacatcc-tttttatccatttcgaagacaagtatttctggacggaggtagtat 132
||||||||||||| |||||||||||||| ||||||| ||| ||||||||| |||||
Sbjct: 85 tctagatacatccatttttatccatttctgcaacaagtagttccggacggagggagtat 143
>54710_tae-miR1135:pmrd
Length = 109
Score = 95.6 bits (48), Expect = 8e-21
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 16 tactccctccgtccggaaatatttgtctaagagatagatgtatctagacgtattttagtt 75
|||||||||||| ||||| || ||||| ||| |||||||||||||||||||||||||||
Sbjct: 108 tactccctccgttcggaattacttgtcgcagaaatagatgtatctagacgtattttagtt 49
Query: 76 ctagatacatcc 87
||||||||||||
Sbjct: 48 ctagatacatcc 37
>54703_tae-miR1128:pmrd
Length = 188
Score = 81.8 bits (41), Expect = 1e-16
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 52 gatgtatctagacgtattttagttctagatacat-cctttttatccatttcgaagacaag 110
|||||||||||| ||||||||||||||||||||| || |||||| ||||| || ||||||
Sbjct: 114 gatgtatctagatgtattttagttctagatacatccccttttattcattttgatgacaag 55
Query: 111 tatttctggacggaggtagta 131
||||| ||||||||| ||||
Sbjct: 54 tattttcggacggagggagta 34
Score = 44.1 bits (22), Expect = 3e-05
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 75 tctagatacat-cctttttatccatttcgaagacaagtatttctggacggaggtagta 131
||||||||||| || || ||||||||| || ||||| |||||| ||||||||| ||||
Sbjct: 103 tctagatacatccccttctatccattttgatgacaactatttccggacggagggagta 160
>54711_tae-miR1136:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 52 gatgtatctagacgtattttagttctagatacatcc 87
|||||||||||| |||||||||||||| ||||||||
Sbjct: 37 gatgtatctagatgtattttagttctaaatacatcc 72
>54702_tae-miR1127:pmrd
Length = 150
Score = 50.1 bits (25), Expect = 4e-07
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 16 tactccctccgtccggaaatatttgtctaagagatagatgtatctagacgtattttagtt 75
|||||| ||||| ||||| || | ||| |||| ||| ||||||||| | | |||||||||
Sbjct: 19 tactccttccgttcggaattactcgtccaagaaataaatgtatctaaatgcattttagtt 78
Query: 76 ctagatacatccttttt 92
||||||||||| ||||
Sbjct: 79 gtagatacatccatttt 95
