miRNEST 2.0, an integrative microRNA resource :: BLAST
>46957_ath-miR168a:pmrd
Length = 138
Score = 135 bits (68), Expect = 1e-32
Identities = 115/127 (90%), Gaps = 4/127 (3%)
Strand = Plus / Plus
Query: 17 caccgtcgggctcggattcgcttggtgcaggtcggga-ctaattcg-ctgacacagccac 74
|||| |||||||||||||||||||||||||||||||| | |||||| ||||||||||| |
Sbjct: 1 caccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctc 60
Query: 75 gtggctctttttc--ttattggtttgtgagcagggattggatcccgccttgcatcaactg 132
||| || || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactg 120
Query: 133 aatcgga 139
|||||||
Sbjct: 121 aatcgga 127
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 133 bits (67), Expect = 5e-32
Identities = 111/122 (90%), Gaps = 4/122 (3%)
Strand = Plus / Plus
Query: 22 tcgggctcggattcgcttggtgcaggtcggga-ctaattcg-ctgacacagccacgtggc 79
|||||||||||||||||||||||||||||||| | |||||| ||||||||||| |||| |
Sbjct: 1 tcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgac 60
Query: 80 tctttttc--ttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcg 137
| || | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcg 120
Query: 138 ga 139
||
Sbjct: 121 ga 122
>46959_ath-miR168m:pmrd
Length = 104
Score = 97.6 bits (49), Expect = 3e-21
Identities = 93/104 (89%), Gaps = 4/104 (3%)
Strand = Plus / Plus
Query: 34 tcgcttggtgcaggtcggga-ctaattcg-ctgacacagccacgtggctctttttc--tt 89
|||||||||||||||||||| | |||||| ||||||||||| |||| || || | ||
Sbjct: 1 tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 60
Query: 90 attggtttgtgagcagggattggatcccgccttgcatcaactga 133
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attggtttgtgagcagggattggatcccgccttgcatcaactga 104
>48349_bna-miR168:pmrd
Length = 133
Score = 73.8 bits (37), Expect = 4e-14
Identities = 89/104 (85%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 34 tcgcttggtgcaggtcggga-ctaattcgctgacacagccacgtggctctttttcttatt 92
|||||||||||||||||||| || ||| |||||||| ||||||||||| || | ||
Sbjct: 18 tcgcttggtgcaggtcgggaactgattggctgacaccgccacgtggct--ttccatggtt 75
Query: 93 ggtttgtgagcagggattggatcccgccttgcatcaactgaatc 136
|| |||||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 76 ggcttgtgagcagggatcggatcccgccttgtatcaagtgaatc 119
>51651_ptc-miR168b:pmrd
Length = 136
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 108 attggatcccgccttgcatcaactgaatcggag 140
|||||||||||||||||||||||||||||||||
Sbjct: 103 attggatcccgccttgcatcaactgaatcggag 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcggga 53
||||||||||||||||||||||
Sbjct: 9 attcgcttggtgcaggtcggga 30
>51650_ptc-miR168a:pmrd
Length = 160
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 108 attggatcccgccttgcatcaactgaatcggag 140
|||||||||||||||||||||||||||||||||
Sbjct: 127 attggatcccgccttgcatcaactgaatcggag 159
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gattcgcttggtgcaggtcggga 53
|||||||||||||||||||||||
Sbjct: 8 gattcgcttggtgcaggtcggga 30
>48560_gma-miR168:pmrd
Length = 125
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 108 attggatcccgccttgcatcaactgaatcggag 140
|||||||||||||||||||||||||||||||||
Sbjct: 81 attggatcccgccttgcatcaactgaatcggag 113
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcggga 53
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>54388_rco-miR168:pmrd
Length = 156
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 108 attggatcccgccttgcatcaactgaatcg 137
||||||||||||||||||||||||||||||
Sbjct: 112 attggatcccgccttgcatcaactgaatcg 141
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcggga 53
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>54802_vvi-miR168:pmrd
Length = 132
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 112 gatcccgccttgcatcaactgaatcggag 140
|||||||||||||||||||||||||||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggag 127
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcggga 53
||||||||||||||||||||||
Sbjct: 9 attcgcttggtgcaggtcggga 30
>46958_ath-miR168b:pmrd
Length = 124
Score = 58.0 bits (29), Expect = 2e-09
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 18 accgtcgggctcggattcgcttggtgcaggtcggg-actaattcgctgacacagccacgt 76
|||| ||| |||||||||||||||||||||||||| ||| ||| |||||||| | |||||
Sbjct: 3 accggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgt 62
Query: 77 g 77
|
Sbjct: 63 g 63
>55000_zma-miR168b:pmrd
Length = 104
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 111 ggatcccgccttgcatcaactgaatcggagc 141
||||||||||||||||||| |||||||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcggagc 93
>54375_pts-miR168b:pmrd
Length = 140
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 108 attggatcccgccttgcatcaactga 133
||||||||||||||||||||||||||
Sbjct: 115 attggatcccgccttgcatcaactga 140
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tcgcttggtgcaggtcggga 53
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54374_pts-miR168a:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 108 attggatcccgccttgcatcaactga 133
||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tcgcttggtgcaggtcggga 53
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54366_ptr-miR168:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 108 attggatcccgccttgcatcaactga 133
||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactga 118
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tcgcttggtgcaggtcggga 53
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54999_zma-miR168a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 111 ggatcccgccttgcatcaactgaatcggagc 141
||||||||||||||| ||| |||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggagc 93
>54637_sof-miR168b:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 111 ggatcccgccttgcatcaactgaatcggagc 141
||||||||||||||| ||| |||||||||||
Sbjct: 62 ggatcccgccttgcaccaagtgaatcggagc 92
>54636_sof-miR168a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 111 ggatcccgccttgcatcaactgaatcggagc 141
||||||||||||||| ||| |||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggagc 93
>48873_osa-miR168a:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 111 ggatcccgccttgcatcaactgaatcggagc 141
||||||||||||||| ||| |||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggagc 85
>48872_osa-miR168a:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 111 ggatcccgccttgcatcaactgaatcggagc 141
||||||||||||||| ||| |||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggagc 85
>48871_osa-miR168a:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 111 ggatcccgccttgcatcaactgaatcggagc 141
||||||||||||||| ||| |||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggagc 85
>54665_stu-miR168:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 34 tcgcttggtgcaggtcgggac 54
|||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggac 21
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 109 ttggatcccgccttgcatcaactga 133
|||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133
>54546_sly-miR168:pmrd
Length = 145
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 34 tcgcttggtgcaggtcgggac 54
|||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggac 21
>48649_hte-miR168:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 tcgcttggtgcaggtcggga 53
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
