miRNEST 2.0, an integrative microRNA resource :: BLAST
>48369_bna-miR171g:pmrd
Length = 115
Score = 85.7 bits (43), Expect = 7e-18
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 71 tctcttagatatctgattgagccgcgtcaatatctcagtgctctctcgtct 121
|||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 65 tctcttagttatctgattgagccgcgccaatatctcagtgctctctcgtct 115
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 10 agagtcctctttgatattggcctggttcattcagat 45
||||||||||||||||||||||||||||| ||||||
Sbjct: 9 agagtcctctttgatattggcctggttcactcagat 44
>48407_bra-miR171e:pmrd
Length = 119
Score = 77.8 bits (39), Expect = 2e-15
Identities = 97/115 (84%), Gaps = 6/115 (5%)
Strand = Plus / Plus
Query: 10 agagtcctctttgatattggcctggttcattcagatcttcccgaccaaaccacgcaaca- 68
||||||||||||||||||||||||||||| ||||||||||| || | | |||| | |
Sbjct: 6 agagtcctctttgatattggcctggttcactcagatcttccagattaca-cacgtactat 64
Query: 69 ----actctcttagatatctgattgagccgcgtcaatatctcagtgctctctcgt 119
| ||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 65 atacattctctcagttatctgattgagccgcgccaatatctcagtgctctctcgt 119
>48368_bna-miR171f:pmrd
Length = 119
Score = 77.8 bits (39), Expect = 2e-15
Identities = 97/115 (84%), Gaps = 6/115 (5%)
Strand = Plus / Plus
Query: 10 agagtcctctttgatattggcctggttcattcagatcttcccgaccaaaccacgcaaca- 68
||||||||||||||||||||||||||||| ||||||||||| || | | |||| | |
Sbjct: 6 agagtcctctttgatattggcctggttcactcagatcttccagattaca-cacgtactat 64
Query: 69 ----actctcttagatatctgattgagccgcgtcaatatctcagtgctctctcgt 119
| ||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 65 atacattctctcagttatctgattgagccgcgccaatatctcagtgctctctcgt 119
>46977_ath-miR171a:pmrd
Length = 123
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 80 tatctgattgagccgcgtcaatatctcagtgctctctcgt 119
||||||||||||||||| |||||||||||| |||||||||
Sbjct: 84 tatctgattgagccgcgccaatatctcagtactctctcgt 123
Score = 58.0 bits (29), Expect = 2e-09
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 8 agagagtcctctttgatattggcctggttcattcagatctt 48
||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 4 agagagtcc-ctttgatattggcctggttcactcagatctt 43
>54829_vvi-miR171b:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 84 tgattgagccgcgtcaatatctc 106
|||||||||||||||||||||||
Sbjct: 69 tgattgagccgcgtcaatatctc 91
>54551_sly-miR171a:pmrd
Length = 122
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 18 ctttgatattggcctggttcattcaga 44
||||||||||||||||||||| |||||
Sbjct: 12 ctttgatattggcctggttcactcaga 38
>48895_osa-miR171a:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 80 tatctgattgagccgcgtcaatatctc 106
||||||||||||||||| |||||||||
Sbjct: 63 tatctgattgagccgcgccaatatctc 89
>46980_ath-miR171m:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 gatattggcctggttcattcagatctt 48
||||||||||||||||| |||||||||
Sbjct: 1 gatattggcctggttcactcagatctt 27
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 80 tatctgattgagccgcgtcaatatc 104
||||||||||||||||| |||||||
Sbjct: 68 tatctgattgagccgcgccaatatc 92
>46975_ath-miR170m:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 gatattggcctggttcattcagatctt 48
||||||||||||||||| |||||||||
Sbjct: 1 gatattggcctggttcactcagatctt 27
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 80 tatctgattgagccgcgtcaatatc 104
||||||||||||||||| |||||||
Sbjct: 68 tatctgattgagccgcgccaatatc 92
>54459_sbi-miR171h:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 gattgagccgcgtcaatatctc 106
||||||||||||||||||||||
Sbjct: 60 gattgagccgcgtcaatatctc 81
>51692_ptc-miR171i:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 tgatattggcctggttcattcagatc 46
|||||||||||||||||| |||||||
Sbjct: 10 tgatattggcctggttcactcagatc 35
>48903_osa-miR171i:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 gattgagccgcgtcaatatctc 106
||||||||||||||||||||||
Sbjct: 89 gattgagccgcgtcaatatctc 110
>55031_zma-miR171d:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 82 tctgattgagccgcgtcaatatctcagtgctct 114
||||||||||||| | |||||||||||| ||||
Sbjct: 80 tctgattgagccgtgccaatatctcagtactct 112
>54458_sbi-miR171g:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 80 tatctgattgagccgcgtcaatatc 104
||||||||||||||||| |||||||
Sbjct: 53 tatctgattgagccgcgccaatatc 77
>54455_sbi-miR171d:pmrd
Length = 154
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 82 tctgattgagccgcgtcaatatctcagtgctct 114
||||||||||||| | |||||||||||| ||||
Sbjct: 113 tctgattgagccgtgccaatatctcagtactct 145
>48899_osa-miR171e:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 82 tctgattgagccgcgtcaatatctcagtgctct 114
||||||||||||| | |||||||| ||||||||
Sbjct: 87 tctgattgagccgtgccaatatcttagtgctct 119
>55026_zma-miR170o:pmrd
Length = 52
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 84 tgattgagccgcgtcaatatctca 107
|||||||||| |||||||||||||
Sbjct: 1 tgattgagccacgtcaatatctca 24
>51689_ptc-miR171f:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 82 tctgattgagccgcgtcaatatctcagtgctc 113
||||||||||||| | |||||||| |||||||
Sbjct: 99 tctgattgagccgtgccaatatcttagtgctc 130
>46851_ace-miR171a:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 84 tgattgagccgcgtcaatatctca 107
||||||||||||| ||||||||||
Sbjct: 1 tgattgagccgcgccaatatctca 24
>46849_ace-miR170c:pmrd
Length = 55
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 84 tgattgagccgcgtcaatatctca 107
||||||||||||| ||||||||||
Sbjct: 1 tgattgagccgcgccaatatctca 24
>46847_ace-miR170a:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 84 tgattgagccgcgtcaatatctca 107
||||||||||||| ||||||||||
Sbjct: 1 tgattgagccgcgccaatatctca 24
