miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>54487_sbi-miR396c:pmrd
          Length = 162

 Score = 93.7 bits (47), Expect = 3e-20
 Identities = 50/51 (98%)
 Strand = Plus / Plus

                                                             
Query: 3  ttcaagtccatgccatgcctttccacagctttcttgaacttcttctcctcc 53
          ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1  ttcaagtccatgccatgcctttccacagctttcttgaacttctcctcctcc 51



 Score = 85.7 bits (43), Expect = 8e-18
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                      
Query: 101 aagaaggtcaagaaagctgtgggaagaaatgacataacaagga 143
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 aagaaggtcaagaaagctgtgggaagaaatgacataacaagga 162




>54869_vvi-miR396b:pmrd
          Length = 108

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 13 tgccatgcctttccacagctttcttgaacttcttctcc 50
          |||||||| |||||||||||||||||||||||||||||
Sbjct: 4  tgccatgcttttccacagctttcttgaacttcttctcc 41



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 25 ccacagctttcttgaacttc 44
          ||||||||||||||||||||
Sbjct: 95 ccacagctttcttgaacttc 76




>48947_osa-miR396c:pmrd
          Length = 141

 Score = 65.9 bits (33), Expect = 8e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 13 tgccatgcctttccacagctttcttgaacttct 45
          |||||||||||||||||||||||||||||||||
Sbjct: 1  tgccatgcctttccacagctttcttgaacttct 33



 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 100 gaagaaggtcaagaaagctgtgggaagaaatg 131
           ||||| ||||||||||||||||||||||||||
Sbjct: 107 gaagagggtcaagaaagctgtgggaagaaatg 138




>55078_zma-miR396g:pmrd
          Length = 117

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 21 ctttccacagctttcttgaacttcttct 48
          ||||||||||||||||||||||||||||
Sbjct: 1  ctttccacagctttcttgaacttcttct 28



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 103 gaaggtcaagaaagctgtgggaag 126
           ||||||||||||||||||||||||
Sbjct: 94  gaaggtcaagaaagctgtgggaag 117




>55077_zma-miR396f:pmrd
          Length = 166

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 21 ctttccacagctttcttgaacttcttct 48
          ||||||||||||||||||||||||||||
Sbjct: 1  ctttccacagctttcttgaacttcttct 28



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 99  cgaagaaggtcaagaaagctgtgggaag 126
           ||||||||||||||||||| ||||||||
Sbjct: 139 cgaagaaggtcaagaaagccgtgggaag 166




>53179_ptc-miRf11357-akr:pmrd
          Length = 141

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 16  catgcctttccacagctttcttgaacttctt 46
           ||||| |||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctt 111




>52080_ptc-miRf10258-akr:pmrd
          Length = 141

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 16  catgcctttccacagctttcttgaacttctt 46
           ||||| |||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctt 111




>51738_ptc-miR396e:pmrd
          Length = 145

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 16 catgcctttccacagctttcttgaacttctt 46
          ||||| |||||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaacttctt 34




>48579_gma-miR396b:pmrd
          Length = 126

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 16 catgcctttccacagctttcttgaacttctt 46
          ||||| |||||||||||||||||||||||||
Sbjct: 14 catgcttttccacagctttcttgaacttctt 44




>48580_gma-miR396c:pmrd
          Length = 117

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 17 atgcctttccacagctttcttgaacttctt 46
          |||| |||||||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaacttctt 44




>51737_ptc-miR396d:pmrd
          Length = 154

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 16 catgcctttccacagctttcttgaacttc 44
          ||||| |||||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaacttc 32




>48748_mtr-miR396a:pmrd
          Length = 93

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 22 tttccacagctttcttgaacttctt 46
          |||||||||||||||||||||||||
Sbjct: 5  tttccacagctttcttgaacttctt 29




>52893_ptc-miRf11071-akr:pmrd
          Length = 148

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 17  atgcctttccacagctttcttgaacttc 44
           |||| |||||||||||||||||||||||
Sbjct: 148 atgcttttccacagctttcttgaacttc 121




>51736_ptc-miR396c:pmrd
          Length = 102

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 13 tgccatgcctttccacagctttcttgaacttc 44
          |||||||  |||||||||||||||||||||||
Sbjct: 1  tgccatgtttttccacagctttcttgaacttc 32



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 23 ttccacagctttcttgaacttctt 46
          |||||| |||||||||||||||||
Sbjct: 94 ttccacggctttcttgaacttctt 71




>54868_vvi-miR396a:pmrd
          Length = 116

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 16 catgcctttccacagctttcttgaact 42
          ||||| |||||||||||||||||||||
Sbjct: 7  catgcttttccacagctttcttgaact 33




>52304_ptc-miRf10482-akr:pmrd
          Length = 102

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 22 tttccacagctttcttgaacttc 44
          |||||||||||||||||||||||
Sbjct: 94 tttccacagctttcttgaacttc 72



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 23 ttccacagctttcttgaacttctt 46
          |||||| |||||||||||||||||
Sbjct: 10 ttccacggctttcttgaacttctt 33




>51564_pta-miR396:pmrd
          Length = 119

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tttccacagctttcttgaactt 43
          ||||||||||||||||||||||
Sbjct: 16 tttccacagctttcttgaactt 37




>47009_ath-miR396b:pmrd
          Length = 135

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tttccacagctttcttgaactt 43
          ||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaactt 31



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 103 gaaggtcaagaaagctgtgggaagaaatgaca 134
           |||| |||||||||||||||||| | ||||||
Sbjct: 104 gaagctcaagaaagctgtgggaaaacatgaca 135




>48374_bna-miR396a:pmrd
          Length = 117

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 ttccacagctttcttgaactt 43
          |||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactt 21




>46888_aqc-miR396b:pmrd
          Length = 89

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 ttccacagctttcttgaactt 43
          |||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactt 21




>55083_zma-miR396l:pmrd
          Length = 97

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55082_zma-miR396k:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55081_zma-miR396j:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55080_zma-miR396i:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55079_zma-miR396h:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55074_zma-miR396c:pmrd
          Length = 104

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55073_zma-miR396b:pmrd
          Length = 136

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>55072_zma-miR396a:pmrd
          Length = 137

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54871_vvi-miR396d:pmrd
          Length = 120

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54870_vvi-miR396c:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54645_sof-miR396:pmrd
          Length = 134

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54584_smo-miR396:pmrd
          Length = 168

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 25  ccacagctttcttgaacttc 44
           ||||||||||||||||||||
Sbjct: 153 ccacagctttcttgaacttc 134




>54486_sbi-miR396b:pmrd
          Length = 128

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54485_sbi-miR396a:pmrd
          Length = 125

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>52339_ptc-miRf10517-akr:pmrd
          Length = 164

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 16 catgcctttccacagctttcttgaactt 43
          ||||| ||||||| ||||||||||||||
Sbjct: 1  catgcttttccacggctttcttgaactt 28




>52079_ptc-miRf10257-akr:pmrd
          Length = 130

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 9  ttccacagctttcttgaact 28




>51740_ptc-miR396g:pmrd
          Length = 168

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 16 catgcctttccacagctttcttgaactt 43
          ||||| ||||||| ||||||||||||||
Sbjct: 4  catgcttttccacggctttcttgaactt 31




>51735_ptc-miR396b:pmrd
          Length = 132

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51734_ptc-miR396a:pmrd
          Length = 123

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48946_osa-miR396b:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48945_osa-miR396a:pmrd
          Length = 154

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48680_lja-miR396:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35




>48578_gma-miR396a:pmrd
          Length = 140

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>48508_ghr-miR396c:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48507_ghr-miR396b:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48485_gcl-miR396a:pmrd
          Length = 101

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 23  ttccacagctttcttgaact 42
           ||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82




>48110_ath-miRf11010-akr:pmrd
          Length = 165

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37




>47008_ath-miR396a:pmrd
          Length = 151

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>46887_aqc-miR396a:pmrd
          Length = 122

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 23 ttccacagctttcttgaact 42
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20