miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>54646_sof-miR408a:pmrd
          Length = 283

 Score =  521 bits (263), Expect = e-149
 Identities = 263/263 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 70

                                                                       
Query: 61  ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 130

                                                                       
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190

                                                                       
Query: 181 cctgacctgagacggctgagagctcagctggtgtcctgttgttgcttcctcccctgcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cctgacctgagacggctgagagctcagctggtgtcctgttgttgcttcctcccctgcact 250

                                  
Query: 241 gcctcttccctggctccccaccg 263
           |||||||||||||||||||||||
Sbjct: 251 gcctcttccctggctccccaccg 273




>54648_sof-miR408c:pmrd
          Length = 286

 Score =  484 bits (244), Expect = e-137
 Identities = 261/266 (98%), Gaps = 3/266 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 11  tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 70

                                                                       
Query: 61  ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 130

                                                                       
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190

                                                                       
Query: 181 cctgacctgagacggctgagagctcagctggtgtcc---tgttgttgcttcctcccctgc 237
           |||||||||||| |||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 191 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 250

                                     
Query: 238 actgcctcttccctggctccccaccg 263
           ||||||||||||||||||||||||||
Sbjct: 251 actgcctcttccctggctccccaccg 276




>54650_sof-miR408e:pmrd
          Length = 283

 Score =  482 bits (243), Expect = e-137
 Identities = 258/263 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 70

                                                                       
Query: 61  ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 71  ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 130

                                                                       
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190

                                                                       
Query: 181 cctgacctgagacggctgagagctcagctggtgtcctgttgttgcttcctcccctgcact 240
           ||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 191 cctgacctgagacggatgagagctcagctggtgtcctgttgttgcttacttccctgcact 250

                                  
Query: 241 gcctcttccctggctccccaccg 263
           | |||||||||||||||||||||
Sbjct: 251 gactcttccctggctccccaccg 273




>54647_sof-miR408b:pmrd
          Length = 286

 Score =  476 bits (240), Expect = e-135
 Identities = 260/266 (97%), Gaps = 3/266 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 11  tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 70

                                                                       
Query: 61  ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 71  ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 130

                                                                       
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190

                                                                       
Query: 181 cctgacctgagacggctgagagctcagctggtgtcc---tgttgttgcttcctcccctgc 237
           |||||||||||| |||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 191 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 250

                                     
Query: 238 actgcctcttccctggctccccaccg 263
           ||||||||||||||||||||||||||
Sbjct: 251 actgcctcttccctggctccccaccg 276




>54649_sof-miR408d:pmrd
          Length = 215

 Score =  145 bits (73), Expect = 2e-35
 Identities = 90/95 (94%), Gaps = 3/95 (3%)
 Strand = Plus / Plus

                                                                       
Query: 172 tggtgatggcctgacctgagacggctgagagctcagctggtgtcc---tgttgttgcttc 228
           ||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||
Sbjct: 111 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 170

                                              
Query: 229 ctcccctgcactgcctcttccctggctccccaccg 263
           | |||||||||||||||||||||||||||||||||
Sbjct: 171 cacccctgcactgcctcttccctggctccccaccg 205



 Score = 99.6 bits (50), Expect = 1e-21
 Identities = 56/58 (96%)
 Strand = Plus / Plus

                                                                    
Query: 6  ttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaatttc 63
          ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73



 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 88  atttctgtttgcttgctcacaaaacg 113
           ||||| ||||||||||||||||||||
Sbjct: 69  atttccgtttgcttgctcacaaaacg 94




>54499_sbi-miR408:pmrd
          Length = 205

 Score =  101 bits (51), Expect = 3e-22
 Identities = 142/174 (81%), Gaps = 25/174 (14%)
 Strand = Plus / Plus

                                                                       
Query: 88  atttctgtttgcttgctcacaaaacggagggatttgt---gagagttatcaggcagaaag 144
           ||||| |||||||||| ||||||| ||||||| ||||   ||||| ||||||||||| ||
Sbjct: 51  atttccgtttgcttgcccacaaaatggagggacttgtcaggagaggtatcaggcagagag 110

                                                                       
Query: 145 aacaaagaaggtgcctccctggtgaagtggtgatggcctgacctgagacggctgagagct 204
           ||       ||||||||||||||||| ||||||||||||||            |||||||
Sbjct: 111 aa-------ggtgcctccctggtgaaatggtgatggcctga------------gagagct 151

                                                                 
Query: 205 cagctggtgtcctg---ttgttgcttcctcccctgcactgcctcttccctggct 255
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 152 cagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205



 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 50/55 (90%), Gaps = 3/55 (5%)
 Strand = Plus / Plus

                                                                 
Query: 12 acagggatgaggcagagcatgggatgaggccat---caacaaaatttccaatttc 63
          ||||||| |||||||||||||||||| ||||||   |||||||||||||||||||
Sbjct: 1  acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55




>48975_osa-miR408:pmrd
          Length = 213

 Score = 77.8 bits (39), Expect = 4e-15
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                      
Query: 217 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 259
           |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcccc 178



 Score = 67.9 bits (34), Expect = 4e-12
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                    
Query: 8  ggagacagggatgaggcagagcatgggatgaggccatcaaca 49
          |||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 26 ggagacagggatgaggcagagcatgggatggggctatcaaca 67




>55104_zma-miR408:pmrd
          Length = 191

 Score = 75.8 bits (38), Expect = 2e-14
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                        
Query: 6  ttggagacagggatgaggcagagcatgggatgaggccatcaacaaa 51
          ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 16 ttggagacagggatgagacagagcatgggatggggccatcaacaaa 61



 Score = 73.8 bits (37), Expect = 6e-14
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                    
Query: 217 tgttgttgcttcctcccctgcactgcctcttccctggctcc 257
           |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 135 tgttgttgctccctcccctgcactgcctcttccctggctcc 175




>54690_tae-miR408:pmrd
          Length = 187

 Score = 63.9 bits (32), Expect = 6e-11
 Identities = 42/44 (95%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                       
Query: 216 ctgttgttgcttcctcccctgcactgcctcttccctggctcccc 259
           ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 119 ctgttgttgctccctccc-tgcactgcctcttccctggctcccc 161



 Score = 56.0 bits (28), Expect = 1e-08
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                          
Query: 8  ggagacagggatgaggcagagcatgggatgaggccatcaacaaaattt 55
          |||||||||||||  |||||||| |||||||||| | |||||||||||
Sbjct: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaaattt 71




>48428_cpt-miR408:pmrd
          Length = 100

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 227 tcctcccctgcactgcctcttccctggctc 256
           ||||||| ||||||||||||||||||||||
Sbjct: 63  tcctcccatgcactgcctcttccctggctc 92




>54389_rco-miR408:pmrd
          Length = 129

 Score = 50.1 bits (25), Expect = 9e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 231 cccctgcactgcctcttccctggct 255
           |||||||||||||||||||||||||
Sbjct: 87  cccctgcactgcctcttccctggct 111




>48142_ath-miRf11042-akr:pmrd
          Length = 99

 Score = 48.1 bits (24), Expect = 3e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 235 tgcactgcctcttccctggctccc 258
           ||||||||||||||||||||||||
Sbjct: 25  tgcactgcctcttccctggctccc 2




>47031_ath-miR408:pmrd
          Length = 218

 Score = 48.1 bits (24), Expect = 3e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 235 tgcactgcctcttccctggctccc 258
           ||||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctccc 144




>54892_vvi-miR408:pmrd
          Length = 107

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 235 tgcactgcctcttccctggctc 256
           ||||||||||||||||||||||
Sbjct: 78  tgcactgcctcttccctggctc 99




>51566_pta-miR408:pmrd
          Length = 86

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 235 tgcactgcctcttccctggctc 256
           ||||||||||||||||||||||
Sbjct: 65  tgcactgcctcttccctggctc 86




>54585_smo-miR408:pmrd
          Length = 109

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 235 tgcactgcctcttccctggct 255
           |||||||||||||||||||||
Sbjct: 77  tgcactgcctcttccctggct 97




>51762_ptc-miR408:pmrd
          Length = 105

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 235 tgcactgcctcttccctggct 255
           |||||||||||||||||||||
Sbjct: 77  tgcactgcctcttccctggct 97




>51397_ppt-miR408b:pmrd
          Length = 144

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 235 tgcactgcctcttccctggct 255
           |||||||||||||||||||||
Sbjct: 94  tgcactgcctcttccctggct 114




>51347_ppe-miR408:pmrd
          Length = 105

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 235 tgcactgcctcttccctggct 255
           |||||||||||||||||||||
Sbjct: 76  tgcactgcctcttccctggct 96




>46892_aqc-miR408:pmrd
          Length = 87

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 235 tgcactgcctcttccctggct 255
           |||||||||||||||||||||
Sbjct: 21  tgcactgcctcttccctggct 1



 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                       
Query: 10 agacagggatgaggcagagcatgggatga 38
          ||||| |||||||||||||||||| ||||
Sbjct: 85 agacaaggatgaggcagagcatggaatga 57