miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49004_osa-miR442:pmrd
Length = 233
Score = 125 bits (63), Expect = 8e-30
Identities = 93/103 (90%)
Strand = Plus / Minus
Query: 8 gcgagacgaatttattaagcctaattaatatgtcattagcatatgtttactgtaacacca 67
||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||
Sbjct: 169 gcgagacgaatttattaagcctaattaatccgtcattagcaaatgtttactgtagcacca 110
Query: 68 cattgtcaaatcatgaactaactaggcttaaaaaattcgtctc 110
|||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 109 cattgtcagatcatggagcaattaggcttaaaagattcgtctc 67
>50895_osa-miRf11680-akr:pmrd
Length = 145
Score = 99.6 bits (50), Expect = 4e-22
Identities = 71/78 (91%)
Strand = Plus / Minus
Query: 1 gtaatccgcgagacgaatttattaagcctaattaatatgtcattagcatatgtttactgt 60
|||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
Sbjct: 131 gtaaaccgcgagacgaatttattaagcctaattaatccatcattagcaaatgtttacttt 72
Query: 61 aacaccacattgtcaaat 78
| ||||||||||||||||
Sbjct: 71 agcaccacattgtcaaat 54
>49008_osa-miR445a:pmrd
Length = 268
Score = 65.9 bits (33), Expect = 6e-12
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 2 taatccgcgagacgaatttattaagcctaattaatatgtcattagcatatgtttactgta 61
||||| ||||||||||||| ||||||||||||||| | |||| | | ||||||||||
Sbjct: 76 taatctgcgagacgaattttttaagcctaattaatccataattatgaaaagtttactgta 135
Query: 62 acaccacattgtcaaatcatg 82
|| |||||||||||||||||
Sbjct: 136 gcatcacattgtcaaatcatg 156
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 90 taggcttaaaaaattcgtctc 110
|||||||||||||||||||||
Sbjct: 104 taggcttaaaaaattcgtctc 84
>50149_osa-miRf10934-akr:pmrd
Length = 143
Score = 63.9 bits (32), Expect = 2e-11
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 15 gaatttattaagcctaattaatatgtcattagcatatgtttactgtaacaccacattgtc 74
|||||||| ||||||||||||| |||||||||| ||||||| |||| ||| |||||||
Sbjct: 116 gaatttatgaagcctaattaatccgtcattagcaaatgtttattgtaccacaacattgtt 57
Query: 75 aaat 78
||||
Sbjct: 56 aaat 53
>49015_osa-miR445h:pmrd
Length = 277
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 taatccgcgagacgaatttattaagcctaattaat 36
||||| ||||||||||||| |||||||||||||||
Sbjct: 89 taatctgcgagacgaattttttaagcctaattaat 123
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 90 taggcttaaaaaattcgtctc 110
|||||||||||||||||||||
Sbjct: 117 taggcttaaaaaattcgtctc 97
>49014_osa-miR445g:pmrd
Length = 275
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 taatccgcgagacgaatttattaagcctaattaat 36
||||| ||||||||||||| |||||||||||||||
Sbjct: 88 taatctgcgagacgaattttttaagcctaattaat 122
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 90 taggcttaaaaaattcgtctc 110
|||||||||||||||||||||
Sbjct: 116 taggcttaaaaaattcgtctc 96
>49012_osa-miR445e:pmrd
Length = 265
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 taatccgcgagacgaatttattaagcctaattaat 36
||||| ||||||||||||| |||||||||||||||
Sbjct: 83 taatctgcgagacgaattttttaagcctaattaat 117
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 90 taggcttaaaaaattcgtctc 110
|||||||||||||||||||||
Sbjct: 111 taggcttaaaaaattcgtctc 91
>49010_osa-miR445c:pmrd
Length = 260
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 taatccgcgagacgaatttattaagcctaattaat 36
||||| ||||||||||||| |||||||||||||||
Sbjct: 81 taatctgcgagacgaattttttaagcctaattaat 115
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 90 taggcttaaaaaattcgtctc 110
|||||||||||||||||||||
Sbjct: 109 taggcttaaaaaattcgtctc 89
>50021_osa-miRf10806-akr:pmrd
Length = 123
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 6 ccgcgagacgaatttattaagcctaattaatatgtcattagcatatgt 53
||||||||||||| | || |||||||||||| |||||||||| ||||
Sbjct: 6 ccgcgagacgaatcttttgagcctaattaatccgtcattagcacatgt 53
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 7 cgcgagacgaatttattaagcctaatta 34
|||||||||||| | |||||||||||||
Sbjct: 117 cgcgagacgaatcttttaagcctaatta 90
>49013_osa-miR445f:pmrd
Length = 305
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 2 taatccgcgagacgaatttattaagcctaattaat 36
||||| ||| ||||||||| |||||||||||||||
Sbjct: 104 taatctgcgggacgaattttttaagcctaattaat 138
>49009_osa-miR445b:pmrd
Length = 264
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 2 taatccgcgagacgaatttattaagcctaattaat 36
||||| |||||||||| || |||||||||||||||
Sbjct: 82 taatctgcgagacgaactttttaagcctaattaat 116
>49455_osa-miRf10240-akr:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 6 ccgcgagacgaatttattaagcctaattaatatgtcattagcatatgt 53
||||||||||||| | || |||||||||||| || ||||||| ||||
Sbjct: 119 ccgcgagacgaatcttttgagcctaattaatccgttattagcacatgt 72
