miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54636_sof-miR168a:pmrd
Length = 104
Score = 194 bits (98), Expect = 9e-51
Identities = 101/102 (99%)
Strand = Plus / Plus
Query: 2 gccgccgcgccgcctcaggctcgcttggtgcagatcgggacccgccgcccggccgacggg 61
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccgccgcgccgcctcgggctcgcttggtgcagatcgggacccgccgcccggccgacggg 60
Query: 62 acggatcccgccttgcaccaagtgaatcggagccggcgcagc 103
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acggatcccgccttgcaccaagtgaatcggagccggcgcagc 102
>54999_zma-miR168a:pmrd
Length = 104
Score = 180 bits (91), Expect = 1e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 5 gccgcgccgcctcaggctcgcttggtgcagatcgggacccgccgcccggccgacgggacg 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gccgcgccgcctcgggctcgcttggtgcagatcgggacccgccgcccggccgacgggacg 63
Query: 65 gatcccgccttgcaccaagtgaatcggagccggcg 99
|||||||||||||||||||||||||||||||||||
Sbjct: 64 gatcccgccttgcaccaagtgaatcggagccggcg 98
>55000_zma-miR168b:pmrd
Length = 104
Score = 176 bits (89), Expect = 2e-45
Identities = 98/101 (97%)
Strand = Plus / Plus
Query: 3 ccgccgcgccgcctcaggctcgcttggtgcagatcgggacccgccgcccggccgacggga 62
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccgccgcgccgtctcgggctcgcttggtgcagatcgggacccgccgcccggccgacggga 61
Query: 63 cggatcccgccttgcaccaagtgaatcggagccggcgcagc 103
|||||||||||||||| ||||||||||||||||||||||||
Sbjct: 62 cggatcccgccttgcatcaagtgaatcggagccggcgcagc 102
>54637_sof-miR168b:pmrd
Length = 103
Score = 153 bits (77), Expect = 3e-38
Identities = 84/85 (98%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 19 ggctcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgca 78
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 ggctcgcttgg-gcagatcgggacccgccgcccggccgacgggacggatcccgccttgca 76
Query: 79 ccaagtgaatcggagccggcgcagc 103
|||||||||||||||||||||||||
Sbjct: 77 ccaagtgaatcggagccggcgcagc 101
>55002_zma-miR168m:pmrd
Length = 65
Score = 129 bits (65), Expect = 4e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 22 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 60
Query: 82 agtga 86
|||||
Sbjct: 61 agtga 65
>54655_ssp-miR168:pmrd
Length = 65
Score = 129 bits (65), Expect = 4e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 22 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 60
Query: 82 agtga 86
|||||
Sbjct: 61 agtga 65
>54436_sbi-miR168:pmrd
Length = 106
Score = 121 bits (61), Expect = 1e-28
Identities = 94/104 (90%), Gaps = 2/104 (1%)
Strand = Plus / Plus
Query: 2 gccgccgcgccgcctcaggctcgcttggtgcagatcgggacccgccgcccgg--ccgacg 59
|||||||||||||||| ||||||||||||||||||||||||| |||||| | | ||||
Sbjct: 1 gccgccgcgccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacg 60
Query: 60 ggacggatcccgccttgcaccaagtgaatcggagccggcgcagc 103
|||| ||||||||||||||||||||||||| ||||||| |||||
Sbjct: 61 ggacagatcccgccttgcaccaagtgaatccgagccggagcagc 104
>48873_osa-miR168a:pmrd
Length = 87
Score = 101 bits (51), Expect = 1e-22
Identities = 80/87 (91%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 12 cgcctcaggctcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcc 69
|||||| |||||||||||||||||||||||||||||||| | || | | ||| |||||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 60
Query: 70 cgccttgcaccaagtgaatcggagccg 96
|||||||||||||||||||||||||||
Sbjct: 61 cgccttgcaccaagtgaatcggagccg 87
>48872_osa-miR168a:pmrd
Length = 87
Score = 101 bits (51), Expect = 1e-22
Identities = 80/87 (91%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 12 cgcctcaggctcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcc 69
|||||| |||||||||||||||||||||||||||||||| | || | | ||| |||||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 60
Query: 70 cgccttgcaccaagtgaatcggagccg 96
|||||||||||||||||||||||||||
Sbjct: 61 cgccttgcaccaagtgaatcggagccg 87
>48871_osa-miR168a:pmrd
Length = 87
Score = 101 bits (51), Expect = 1e-22
Identities = 80/87 (91%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 12 cgcctcaggctcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcc 69
|||||| |||||||||||||||||||||||||||||||| | || | | ||| |||||||
Sbjct: 1 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcc 60
Query: 70 cgccttgcaccaagtgaatcggagccg 96
|||||||||||||||||||||||||||
Sbjct: 61 cgccttgcaccaagtgaatcggagccg 87
>48661_hvv-miR168:pmrd
Length = 66
Score = 91.7 bits (46), Expect = 1e-19
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 22 tcgcttggtgcagatcgggacccgccgcccggcc-gacgggacggatcccgccttgcacc 80
||||||||||||||||||||||| ||||||| || |||||| ||||||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggaccctccgcccgccccgacgggccggatcccgccttgcacc 60
Query: 81 aagtga 86
||||||
Sbjct: 61 aagtga 66
>55001_zma-miR168c:pmrd
Length = 67
Score = 77.8 bits (39), Expect = 1e-15
Identities = 62/67 (92%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 22 tcgcttggtgcagatcgggacccgccgcccggc-cgacgggacggatcccg-ccttgcac 79
||||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct: 1 tcgcttgttgcagatcgggacccgccgccccgcgcgacgggacggatcccgcccttgcat 60
Query: 80 caagtga 86
|||||||
Sbjct: 61 caagtga 67
>48875_osa-miR168m:pmrd
Length = 67
Score = 69.9 bits (35), Expect = 4e-13
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 22 tcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcccgccttgcac 79
||||||||||||||||||||||||||||| | || | | ||| |||||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 60
Query: 80 caagtga 86
|||||||
Sbjct: 61 caagtga 67
>54802_vvi-miR168:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 65 gatcccgccttgcaccaagtgaatcggagccggc 98
|||||||||||||| ||| |||||||||| ||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggagacggc 132
>51651_ptc-miR168b:pmrd
Length = 136
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 ggatcccgccttgcaccaagtgaatcggag 93
||||||||||||||| ||| ||||||||||
Sbjct: 106 ggatcccgccttgcatcaactgaatcggag 135
>51650_ptc-miR168a:pmrd
Length = 160
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 ggatcccgccttgcaccaagtgaatcggag 93
||||||||||||||| ||| ||||||||||
Sbjct: 130 ggatcccgccttgcatcaactgaatcggag 159
>48560_gma-miR168:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 ggatcccgccttgcaccaagtgaatcggag 93
||||||||||||||| ||| ||||||||||
Sbjct: 84 ggatcccgccttgcatcaactgaatcggag 113
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 64 ggatcccgccttgcaccaagtgaatcgga 92
||||||||||||||| ||| |||||||||
Sbjct: 94 ggatcccgccttgcatcaactgaatcgga 122
>46957_ath-miR168a:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 64 ggatcccgccttgcaccaagtgaatcgga 92
||||||||||||||| ||| |||||||||
Sbjct: 99 ggatcccgccttgcatcaactgaatcgga 127
