miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51060_osa-miRf11845-akr:pmrd
Length = 72
Score = 99.6 bits (50), Expect = 3e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 12 gctcgttctggctcgttaagataacgagccagctcggctcggctcgttatcctaacgagc 71
||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gctcggtctggctcgttaggataacgagctagctcggctcggctcgttatcctaacgagc 60
Query: 72 cagaaa 77
|||||
Sbjct: 61 tagaaa 66
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 53 gctcgttatcctaacgagccaga 75
|||||||||||||||||||||||
Sbjct: 29 gctcgttatcctaacgagccaga 7
>50981_osa-miRf11766-akr:pmrd
Length = 69
Score = 95.6 bits (48), Expect = 5e-21
Identities = 57/60 (95%)
Strand = Plus / Minus
Query: 18 tctggctcgttaagataacgagccagctcggctcggctcgttatcctaacgagccagaaa 77
|||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 62 tctggctcgttaggataacgagctagctcggctcggctcgttatcctaacgagctagaaa 3
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gctcgttatcctaacgagccaga 75
|||||||||||||||||||||||
Sbjct: 40 gctcgttatcctaacgagccaga 62
>51223_osa-miRf12008-akr:pmrd
Length = 74
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 11 ggctcgttctggctcgttaagataacgagccagctcggctcggctcgttatcctaacgag 70
|||||| ||||||||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ggctcggtctggctcgctaggataacgagctagctcggctcggctcgttatcctaacgag 60
Query: 71 ccagaaa 77
| |||||
Sbjct: 61 ctagaaa 67
>50743_osa-miRf11528-akr:pmrd
Length = 72
Score = 87.7 bits (44), Expect = 1e-18
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 12 gctcgttctggctcgttaagataacgagccagctcggctcggctcgttatcctaacgagc 71
||||| |||||||||||| |||||||||| |||||||||||||| |||||||||||||||
Sbjct: 1 gctcggtctggctcgttaggataacgagctagctcggctcggcttgttatcctaacgagc 60
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 53 gctcgttatcctaacgagccaga 75
|||||||||||||||||||||||
Sbjct: 29 gctcgttatcctaacgagccaga 7
>50957_osa-miRf11742-akr:pmrd
Length = 111
Score = 83.8 bits (42), Expect = 2e-17
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 22 gctcgttaagataacgagccagctcggctcggctcgttatcctaacgagccagaaagcca 81
|||||||| |||||| ||| ||||||||||||||| ||||| |||||||| ||||| |||
Sbjct: 1 gctcgttaggataacaagctagctcggctcggctcattatcgtaacgagctagaaaccca 60
Query: 82 gctcggctcg 91
||||||||||
Sbjct: 61 gctcggctcg 70
>50684_osa-miRf11469-akr:pmrd
Length = 72
Score = 83.8 bits (42), Expect = 2e-17
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 22 gctcgttaagataacgagccagctcggctcggctcgttatcctaacgagccagaaagcca 81
|||||||| |||||||||| ||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 62 gctcgttaggataacgagctagctcggctcggctcgttatcgtaacgagctagaaaccca 3
Query: 82 gc 83
||
Sbjct: 2 gc 1
>49717_osa-miRf10502-akr:pmrd
Length = 77
Score = 65.9 bits (33), Expect = 5e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 43 gctcggctcggctcgttatcctaacgagccagaaagccagc 83
||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 37 gctcggctcggctcgttatcctaacgagctagaaacccagc 77
>50473_osa-miRf11258-akr:pmrd
Length = 72
Score = 61.9 bits (31), Expect = 7e-11
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 21 ggctcgttaagataacgagccagctcggctcggctcgttatcctaacgagc 71
||||||||| ||||| |||| |||| ||||||||||||||||||||||||
Sbjct: 63 ggctcgttaggataatgagctggctcagctcggctcgttatcctaacgagc 13
>49771_osa-miRf10556-akr:pmrd
Length = 67
Score = 52.0 bits (26), Expect = 7e-08
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 22 gctcgttaagataacgagccagctcggctcggctcgttatcctaacgagc 71
||||||| || |||||||| |||||||||||||||||||| |||||||
Sbjct: 8 gctcgtttagttaacgagctggctcggctcggctcgttatctaaacgagc 57
>50701_osa-miRf11486-akr:pmrd
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 ggctcggctcgttatcctaacgagc 71
|||||||||||||||||||||||||
Sbjct: 1 ggctcggctcgttatcctaacgagc 25
>50004_osa-miRf10789-akr:pmrd
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 43 gctcggctcggctcgttatcctaacgagc 71
||||||||||||||||||||||| |||||
Sbjct: 33 gctcggctcggctcgttatcctagcgagc 61
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 18 tctggctcgttaagataacgagccagctcggctcggctcg 57
|||||||||||| |||| |||| ||||||||||||||||
Sbjct: 3 tctggctcgttagaataatgagctagctcggctcggctcg 42
>49392_osa-miRf10177-akr:pmrd
Length = 131
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 33 taacgagccagctcggctcggctcgtta 60
||||||||| ||||||||||||||||||
Sbjct: 44 taacgagcctgctcggctcggctcgtta 71
>49469_osa-miRf10254-akr:pmrd
Length = 73
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 51 cggctcgttatcctaacgagc 71
|||||||||||||||||||||
Sbjct: 29 cggctcgttatcctaacgagc 9
