miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54632_sof-miR159e:pmrd
Length = 264
Score = 523 bits (264), Expect = e-149
Identities = 264/264 (100%)
Strand = Plus / Plus
Query: 21 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggt 60
Query: 81 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtat 120
Query: 141 tttcgagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgtg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttcgagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgtg 180
Query: 201 gtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaaggag 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaaggag 240
Query: 261 ctcttgcatctgatccatccatcc 284
||||||||||||||||||||||||
Sbjct: 241 ctcttgcatctgatccatccatcc 264
>54628_sof-miR159a:pmrd
Length = 265
Score = 464 bits (234), Expect = e-131
Identities = 260/266 (97%), Gaps = 2/266 (0%)
Strand = Plus / Plus
Query: 20 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 60
Query: 80 tggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 139
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 120
Query: 140 ttttcgagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgt 199
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 121 ttttcgagagggaggagaggagctagactctcatggtggtcgtctttgagataggcttgt 180
Query: 200 ggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaagga 259
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 181 ggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggga 240
Query: 260 gctcttgcat-ctgatccatccatcc 284
|||| ||||| |||||||||||||||
Sbjct: 241 gctc-tgcatcctgatccatccatcc 265
>54629_sof-miR159b:pmrd
Length = 266
Score = 458 bits (231), Expect = e-129
Identities = 261/267 (97%), Gaps = 3/267 (1%)
Strand = Plus / Plus
Query: 20 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 60
Query: 80 tggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 120
Query: 140 ttttc-gagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttg 198
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttttcggagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttg 180
Query: 199 tggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaagg 258
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 181 tggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggg 240
Query: 259 agctcttgcat-ctgatccatccatcc 284
||||| ||||| |||| ||||||||||
Sbjct: 241 agctc-tgcatcctgaaccatccatcc 266
>54631_sof-miR159d:pmrd
Length = 265
Score = 440 bits (222), Expect = e-124
Identities = 257/266 (96%), Gaps = 2/266 (0%)
Strand = Plus / Plus
Query: 20 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg 60
Query: 80 tggttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 139
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 120
Query: 140 ttttcgagagggaggagaggagctagactctcacggtggtcgtctttgagataggcttgt 199
||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||||||
Sbjct: 121 ttttcgagagggaggagaggagctagactctcatgggggtcgtctatgagatacgcttgt 180
Query: 200 ggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaagga 259
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 181 ggtttgcatgaccgatgagctgcaccgtccccttgctggccgctctttggattgaaggga 240
Query: 260 gctcttgcat-ctgatccatccatcc 284
|||| ||||| |||||||||||||||
Sbjct: 241 gctc-tgcatcctgatccatccatcc 265
>54930_zma-miR159a:pmrd
Length = 246
Score = 159 bits (80), Expect = 2e-39
Identities = 96/100 (96%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 28 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg-tggttcc 86
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 9 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 68
Query: 87 gctgctcgttcatggttcccactatcctatctcatcatgt 126
||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gctgctcgttcatggttcccactatcctatctcatcatgt 108
Score = 147 bits (74), Expect = 6e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 179 tcgtctttgagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctgg 238
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 141 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 200
Query: 239 ccgctctttggattgaaaggagctct 264
||||||||||||||||| ||||||||
Sbjct: 201 ccgctctttggattgaagggagctct 226
>51338_pgl-miR159:pmrd
Length = 226
Score = 135 bits (68), Expect = 2e-32
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 185 ttgagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctc 244
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 146 ttgagataggcttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctc 205
Query: 245 tttggattgaaaggagctct 264
||||||||||| ||||||||
Sbjct: 206 tttggattgaagggagctct 225
Score = 77.8 bits (39), Expect = 5e-15
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 40 cggagctcctatcattccaatgaagggccgttctgaagggt-ggttccgctgctcgttca 98
|||||||||||||||||||||||| || ||| | |||| ||| | ||||||||||||
Sbjct: 1 cggagctcctatcattccaatgaaaggttgtttttgtgggttggtacagctgctcgttca 60
Query: 99 tggttcccactatcctatctcat 121
|||||||||||||||||||||||
Sbjct: 61 tggttcccactatcctatctcat 83
>54392_sar-miR159:pmrd
Length = 175
Score = 99.6 bits (50), Expect = 1e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 187 gagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctt 246
||||||||| ||||| |||||||||||| |||| ||| |||||||| |||||||||||||
Sbjct: 97 gagataggcctgtggcttgcatgaccgaggagccgcatcgtcccctcgctggccgctctt 156
Query: 247 tggattgaaaggagctct 264
||||||||| ||||||||
Sbjct: 157 tggattgaagggagctct 174
Score = 73.8 bits (37), Expect = 7e-14
Identities = 69/77 (89%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 41 ggagctcctatcattccaatgaagggccgttct-gaa-gggtggttccgctgctcgttca 98
||||||||||||||||||||||| || | | || ||| ||||||| | ||||||||||||
Sbjct: 2 ggagctcctatcattccaatgaaaggtcttgctagaaggggtggtacagctgctcgttca 61
Query: 99 tggttcccactatccta 115
|||||||||||||||||
Sbjct: 62 tggttcccactatccta 78
>54931_zma-miR159b:pmrd
Length = 221
Score = 81.8 bits (41), Expect = 3e-16
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 185 ttgagataggcttgtggtttgcatgaccgaagagctgcaccgtcccctt-gctggccgct 243
||||||| |||||||||||||||||||||| |||||||| ||||||||| | || |||||
Sbjct: 122 ttgagatgggcttgtggtttgcatgaccgaggagctgca-cgtccccttcgttgaccgct 180
Query: 244 ctttggattgaaaggagctct 264
||||||||||| ||||||||
Sbjct: 181 gtttggattgaagggagctct 201
Score = 65.9 bits (33), Expect = 2e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 71 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcatca 123
||||| ||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 52 tctgatgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 104
>54673_tae-miR159a:pmrd
Length = 177
Score = 79.8 bits (40), Expect = 1e-15
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 41 ggagctcctatcattccaatgaagggccgttctgaagggtg-gttccgctgctcgttcat 99
|||||||||||||||||||||||||| | | ||||||| || | |||||||||||||
Sbjct: 3 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgctcgttcat 62
Query: 100 ggttcccactatcctatctc 119
||||||||||||||||||||
Sbjct: 63 ggttcccactatcctatctc 82
Score = 60.0 bits (30), Expect = 1e-09
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 187 gagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctt 246
|||| |||| |||||||||||||||||| |||| || || |||| |||| ||||| ||
Sbjct: 96 gagagaggcctgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 247 tggattgaaaggagctct 264
||||||||| ||||||||
Sbjct: 156 tggattgaagggagctct 173
>54934_zma-miR159e:pmrd
Length = 203
Score = 73.8 bits (37), Expect = 7e-14
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 185 ttgagataggcttgtggtttgcatgaccgaagagctgcaccgtcccctt-gctggccgct 243
||||||| |||||||||||||||||||||| ||||||| ||||||||| | || |||||
Sbjct: 121 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 180
Query: 244 ctttggattgaaaggagctct 264
|||||| |||| ||||||||
Sbjct: 181 gtttggagtgaagggagctct 201
Score = 65.9 bits (33), Expect = 2e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 71 tctgaagggtggttccgctgctcgttcatggttcccactatcctatctcatca 123
||||| ||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 34 tctgatgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 86
>48657_hvv-miR159b:pmrd
Length = 174
Score = 71.9 bits (36), Expect = 3e-13
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 41 ggagctcctatcattccaatgaagggccgttctgaagggtg-gttccgctgctcgttcat 99
|||||||||||||||||||||||||| | | ||||||| || | |||||| ||||||
Sbjct: 2 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgcttgttcat 61
Query: 100 ggttcccactatcctatctc 119
||||||||||||||||||||
Sbjct: 62 ggttcccactatcctatctc 81
Score = 67.9 bits (34), Expect = 4e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 187 gagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctt 246
|||||||||||||||||||||||| ||| |||| || || |||| |||| ||||| ||
Sbjct: 96 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 247 tggattgaaaggagctct 264
||||||||| ||||||||
Sbjct: 156 tggattgaagggagctct 173
>48820_osa-miR159b:pmrd
Length = 188
Score = 69.9 bits (35), Expect = 1e-12
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 35 tgaagcggagctcctatcattccaatgaagggccgttctgaagggtggttccgctgctcg 94
||||| ||||||||| || |||||||||| || ||||||||||| | | |||||| |
Sbjct: 6 tgaagtggagctcctttcgttccaatgaaaggtttatctgaagggtgatacagctgcttg 65
Query: 95 ttcatggttcccactatcctatctcat 121
||||||||||||||||| |||||||||
Sbjct: 66 ttcatggttcccactattctatctcat 92
Score = 67.9 bits (34), Expect = 4e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 187 gagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgctctt 246
|||||||||||||||||||||||||| | |||| | | | | |||||||| || |||||
Sbjct: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
Query: 247 tggattgaaaggagctct 264
||||||||| ||||||||
Sbjct: 160 tggattgaagggagctct 177
