miRNEST 2.0, an integrative microRNA resource :: BLAST
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 89.7 bits (45), Expect = 6e-19
Identities = 102/118 (86%), Gaps = 6/118 (5%)
Strand = Plus / Plus
Query: 21 gctcggattcgcctggtgcaggtcgggaaccaatt-gtctgacacatccacga-agtttt 78
|||||||||||| |||||||||||||||||||||| | |||||||| || || | ||||
Sbjct: 5 gctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgactttt 64
Query: 79 ac----ttgctggtttgtgagcagggattggatcccgccttgcatcaaatgaatcgga 132
| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 65 aaacctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcgga 122
>46957_ath-miR168a:pmrd
Length = 138
Score = 89.7 bits (45), Expect = 6e-19
Identities = 102/118 (86%), Gaps = 6/118 (5%)
Strand = Plus / Plus
Query: 21 gctcggattcgcctggtgcaggtcgggaaccaatt-gtctgacacatccacga-agtttt 78
|||||||||||| |||||||||||||||||||||| | |||||||| || || | ||||
Sbjct: 10 gctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgactttt 69
Query: 79 ac----ttgctggtttgtgagcagggattggatcccgccttgcatcaaatgaatcgga 132
| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 70 aaacctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcgga 127
>46959_ath-miR168m:pmrd
Length = 104
Score = 75.8 bits (38), Expect = 8e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 85 tggtttgtgagcagggattggatcccgccttgcatcaa 122
||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tggtttgtgagcagggattggatcccgccttgcatcaa 100
>48349_bna-miR168:pmrd
Length = 133
Score = 65.9 bits (33), Expect = 8e-12
Identities = 91/109 (83%), Gaps = 1/109 (0%)
Strand = Plus / Plus
Query: 29 tcgcctggtgcaggtcgggaaccaattgtctgacacatccacgaagttttacttgct-gg 87
|||| ||||||||||||||||| |||| ||||||| ||||| | ||| | || | ||
Sbjct: 18 tcgcttggtgcaggtcgggaactgattggctgacaccgccacgtggctttccatggttgg 77
Query: 88 tttgtgagcagggattggatcccgccttgcatcaaatgaatcggagtcc 136
|||||||||||||| ||||||||||||| ||||| |||||| ||||||
Sbjct: 78 cttgtgagcagggatcggatcccgccttgtatcaagtgaatccgagtcc 126
>51651_ptc-miR168b:pmrd
Length = 136
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 101 attggatcccgccttgcatcaaatgaatcggag 133
|||||||||||||||||||||| ||||||||||
Sbjct: 103 attggatcccgccttgcatcaactgaatcggag 135
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 27 attcgcctggtgcaggtcgggaac 50
|||||| |||||||||||||||||
Sbjct: 9 attcgcttggtgcaggtcgggaac 32
>51650_ptc-miR168a:pmrd
Length = 160
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 101 attggatcccgccttgcatcaaatgaatcggag 133
|||||||||||||||||||||| ||||||||||
Sbjct: 127 attggatcccgccttgcatcaactgaatcggag 159
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 26 gattcgcctggtgcaggtcgggaac 50
||||||| |||||||||||||||||
Sbjct: 8 gattcgcttggtgcaggtcgggaac 32
>48560_gma-miR168:pmrd
Length = 125
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 101 attggatcccgccttgcatcaaatgaatcggag 133
|||||||||||||||||||||| ||||||||||
Sbjct: 81 attggatcccgccttgcatcaactgaatcggag 113
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 27 attcgcctggtgcaggtcgggaacc 51
|||||| ||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>46958_ath-miR168b:pmrd
Length = 124
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 22 ctcggattcgcctggtgcaggtcgggaaccaattgtctgacac 64
||||||||||| ||||||||||||||||| |||| |||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaactgattggctgacac 54
>55000_zma-miR168b:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 104 ggatcccgccttgcatcaaatgaatcggag 133
||||||||||||||||||| ||||||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcggag 92
>54388_rco-miR168:pmrd
Length = 156
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 101 attggatcccgccttgcatcaaatgaatcg 130
|||||||||||||||||||||| |||||||
Sbjct: 112 attggatcccgccttgcatcaactgaatcg 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 27 attcgcctggtgcaggtcgggaac 50
|||||| |||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>54802_vvi-miR168:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 105 gatcccgccttgcatcaaatgaatcggag 133
|||||||||||||||||| ||||||||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggag 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 27 attcgcctggtgcaggtcgggaacc 51
|||||| ||||||||||||||||||
Sbjct: 9 attcgcttggtgcaggtcgggaacc 33
>54999_zma-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 104 ggatcccgccttgcatcaaatgaatcggag 133
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>54637_sof-miR168b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 104 ggatcccgccttgcatcaaatgaatcggag 133
||||||||||||||| ||| ||||||||||
Sbjct: 62 ggatcccgccttgcaccaagtgaatcggag 91
>54636_sof-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 104 ggatcccgccttgcatcaaatgaatcggag 133
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>54375_pts-miR168b:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 attggatcccgccttgcatcaa 122
||||||||||||||||||||||
Sbjct: 115 attggatcccgccttgcatcaa 136
>54374_pts-miR168a:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 attggatcccgccttgcatcaa 122
||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaa 114
>54366_ptr-miR168:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 attggatcccgccttgcatcaa 122
||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaa 114
>48873_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 104 ggatcccgccttgcatcaaatgaatcggag 133
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48872_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 104 ggatcccgccttgcatcaaatgaatcggag 133
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48871_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 104 ggatcccgccttgcatcaaatgaatcggag 133
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
