miRNEST 2.0, an integrative microRNA resource :: BLAST
>46994_ath-miR319c:pmrd
Length = 199
Score = 214 bits (108), Expect = 2e-56
Identities = 176/195 (90%), Gaps = 4/195 (2%)
Strand = Plus / Plus
Query: 20 tagatatagaaggagattctttcagtccagtcatggatagaacaagaagagggtagaaac 79
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 tagatatagaaggagattctttcagtccagtcatggatagaaaaagaagagggtagaaat 60
Query: 80 atctgccgactcatccatccaaacacttctggtaaaaagaaaaga-gattttataccaca 138
||||||||||||||||||||||||||| |||| | ||||| || | |||| ||| ||
Sbjct: 61 atctgccgactcatccatccaaacactcgtggt--agagaaacgataaatttaaaccgca 118
Query: 139 gtggctgtgtgaatgatgcgggagat-gttttcatctctctttatctgtgtttggactga 197
||| |||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttctttatctgtgtttggactga 178
Query: 198 agggagctccttctt 212
|||||||||||||||
Sbjct: 179 agggagctccttctt 193
>51351_ppl-miR319:pmrd
Length = 204
Score = 67.9 bits (34), Expect = 3e-12
Identities = 64/70 (91%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 144 tgtgtgaatgatgcgggagat-gtttt-catctc-tctttatctgtgtttggactgaagg 200
||||||||||||||||||||| ||||| |||| | ||||| |||||| ||||||||||||
Sbjct: 126 tgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgcttggactgaagg 185
Query: 201 gagctccttc 210
||||||||||
Sbjct: 186 gagctccttc 195
>51713_ptc-miR319g:pmrd
Length = 204
Score = 61.9 bits (31), Expect = 2e-10
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 144 tgtgtgaatgatgcgggagat--gttttcat-ctctctttatctgtgtttggactgaagg 200
||||||||||||||||||||| ||| ||| ||||| || |||||| ||||||||||||
Sbjct: 128 tgtgtgaatgatgcgggagataattttccatcctctccttttctgtgcttggactgaagg 187
Query: 201 gagctccttc 210
||||||||||
Sbjct: 188 gagctccttc 197
>51712_ptc-miR319f:pmrd
Length = 202
Score = 61.9 bits (31), Expect = 2e-10
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 144 tgtgtgaatgatgcgggagatgtttt--catctc-tctttatctgtgtttggactgaagg 200
||||||||||||||||||||| ||| |||| | ||||| |||||| ||||||||||||
Sbjct: 126 tgtgtgaatgatgcgggagataattttacatcccctctttttctgtgcttggactgaagg 185
Query: 201 gagctccttc 210
||||||||||
Sbjct: 186 gagctccttc 195
>54380_pvu-miR319c:pmrd
Length = 734
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 175 ctctttatctgtgtttggactgaagggagctccttctt 212
|||||| |||| | ||||||||||||||||||||||||
Sbjct: 396 ctctttctctgagcttggactgaagggagctccttctt 433
>48574_gma-miR319c:pmrd
Length = 221
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 175 ctctttatctgtgtttggactgaagggagctccttctt 212
|||||| |||||| |||||||||| |||||||||||||
Sbjct: 169 ctctttctctgtgcttggactgaaaggagctccttctt 206
>54846_vvi-miR319f:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 182 tctgtgtttggactgaagggagctcc 207
|||||| |||||||||||||||||||
Sbjct: 155 tctgtgcttggactgaagggagctcc 180
>51710_ptc-miR319d:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 182 tctgtgtttggactgaagggagctcc 207
|||||| |||||||||||||||||||
Sbjct: 158 tctgtgcttggactgaagggagctcc 183
>51709_ptc-miR319c:pmrd
Length = 196
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 182 tctgtgtttggactgaagggagctcc 207
|||||| |||||||||||||||||||
Sbjct: 161 tctgtgcttggactgaagggagctcc 186
>54845_vvi-miR319e:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 188 tttggactgaagggagctcct 208
|||||||||||||||||||||
Sbjct: 76 tttggactgaagggagctcct 96
>54844_vvi-miR319c:pmrd
Length = 182
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 183 ctgtgtttggactgaagggagctcc 207
||||| |||||||||||||||||||
Sbjct: 145 ctgtgcttggactgaagggagctcc 169
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 182 tctgtgtttggactgaagggagctc 206
|||||| ||||||||||||||||||
Sbjct: 146 tctgtgcttggactgaagggagctc 170
>46863_aqc-miR159:pmrd
Length = 71
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 186 tgtttggactgaagggagctc 206
|||||||||||||||||||||
Sbjct: 48 tgtttggactgaagggagctc 68
>52398_ptc-miRf10576-akr:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 189 ttggactgaagggagctcct 208
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>51714_ptc-miR319h:pmrd
Length = 195
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 189 ttggactgaagggagctcct 208
||||||||||||||||||||
Sbjct: 165 ttggactgaagggagctcct 184
>51711_ptc-miR319e:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 189 ttggactgaagggagctcct 208
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>51385_ppt-miR319b:pmrd
Length = 160
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 189 ttggactgaagggagctcct 208
||||||||||||||||||||
Sbjct: 141 ttggactgaagggagctcct 160
