miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48730_mtr-miR393:pmrd
Length = 135
Score = 67.9 bits (34), Expect = 5e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggatgcctccttaagttgc 377
|||||||||||||||||||||||||||||| |||||||
Sbjct: 42 ggatcaatgcgatccctttggatgcctcctcaagttgc 5
>54850_vvi-miR393b:pmrd
Length = 83
Score = 60.0 bits (30), Expect = 1e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggatgcctcct 369
||||||||||||||||||||||||||||||
Sbjct: 32 ggatcaatgcgatccctttggatgcctcct 3
Score = 58.0 bits (29), Expect = 5e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 10 aaaggaggagtccaaagggatagcatgatccaa 42
||||||||| |||||||||||||||||||||||
Sbjct: 81 aaaggaggaatccaaagggatagcatgatccaa 49
>53841_ptc-miRf12019-akr:pmrd
Length = 98
Score = 60.0 bits (30), Expect = 1e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggatgcctcct 369
||||||||||||||||||||||||||||||
Sbjct: 38 ggatcaatgcgatccctttggatgcctcct 9
Score = 58.0 bits (29), Expect = 5e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 10 aaaggaggagtccaaagggatagcatgatccaa 42
||||||||| |||||||||||||||||||||||
Sbjct: 92 aaaggaggaatccaaagggatagcatgatccaa 60
>53840_ptc-miRf12018-akr:pmrd
Length = 92
Score = 60.0 bits (30), Expect = 1e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggatgcctcct 369
||||||||||||||||||||||||||||||
Sbjct: 35 ggatcaatgcgatccctttggatgcctcct 6
Score = 58.0 bits (29), Expect = 5e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 10 aaaggaggagtccaaagggatagcatgatccaa 42
||||||||| |||||||||||||||||||||||
Sbjct: 89 aaaggaggaatccaaagggatagcatgatccaa 57
>52949_ptc-miRf11127-akr:pmrd
Length = 93
Score = 60.0 bits (30), Expect = 1e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggatgcctcct 369
||||||||||||||||||||||||||||||
Sbjct: 35 ggatcaatgcgatccctttggatgcctcct 6
Score = 58.0 bits (29), Expect = 5e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 10 aaaggaggagtccaaagggatagcatgatccaa 42
||||||||| |||||||||||||||||||||||
Sbjct: 90 aaaggaggaatccaaagggatagcatgatccaa 58
>52948_ptc-miRf11126-akr:pmrd
Length = 93
Score = 60.0 bits (30), Expect = 1e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggatgcctcct 369
||||||||||||||||||||||||||||||
Sbjct: 35 ggatcaatgcgatccctttggatgcctcct 6
Score = 58.0 bits (29), Expect = 5e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 10 aaaggaggagtccaaagggatagcatgatccaa 42
||||||||| |||||||||||||||||||||||
Sbjct: 90 aaaggaggaatccaaagggatagcatgatccaa 58
>52374_ptc-miRf10552-akr:pmrd
Length = 92
Score = 60.0 bits (30), Expect = 1e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggatgcctcct 369
||||||||||||||||||||||||||||||
Sbjct: 35 ggatcaatgcgatccctttggatgcctcct 6
Score = 58.0 bits (29), Expect = 5e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 10 aaaggaggagtccaaagggatagcatgatccaa 42
||||||||| |||||||||||||||||||||||
Sbjct: 89 aaaggaggaatccaaagggatagcatgatccaa 57
>51972_ptc-miRf10150-akr:pmrd
Length = 98
Score = 60.0 bits (30), Expect = 1e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 340 ggatcaatgcgatccctttggatgcctcct 369
||||||||||||||||||||||||||||||
Sbjct: 61 ggatcaatgcgatccctttggatgcctcct 90
Score = 58.0 bits (29), Expect = 5e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 10 aaaggaggagtccaaagggatagcatgatccaa 42
||||||||| |||||||||||||||||||||||
Sbjct: 7 aaaggaggaatccaaagggatagcatgatccaa 39
>51950_ptc-miRf10128-akr:pmrd
Length = 99
Score = 60.0 bits (30), Expect = 1e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggatgcctcct 369
||||||||||||||||||||||||||||||
Sbjct: 38 ggatcaatgcgatccctttggatgcctcct 9
Score = 58.0 bits (29), Expect = 5e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 10 aaaggaggagtccaaagggatagcatgatccaa 42
||||||||| |||||||||||||||||||||||
Sbjct: 93 aaaggaggaatccaaagggatagcatgatccaa 61
>51721_ptc-miR393b:pmrd
Length = 84
Score = 60.0 bits (30), Expect = 1e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggatgcctcct 369
||||||||||||||||||||||||||||||
Sbjct: 32 ggatcaatgcgatccctttggatgcctcct 3
Score = 54.0 bits (27), Expect = 8e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 12 aggaggagtccaaagggatagcatgatccaa 42
||||||| |||||||||||||||||||||||
Sbjct: 84 aggaggaatccaaagggatagcatgatccaa 54
>51720_ptc-miR393a:pmrd
Length = 85
Score = 60.0 bits (30), Expect = 1e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggatgcctcct 369
||||||||||||||||||||||||||||||
Sbjct: 32 ggatcaatgcgatccctttggatgcctcct 3
Score = 54.0 bits (27), Expect = 8e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 12 aggaggagtccaaagggatagcatgatccaa 42
||||||| |||||||||||||||||||||||
Sbjct: 85 aggaggaatccaaagggatagcatgatccaa 55
>48576_gma-miR393:pmrd
Length = 120
Score = 60.0 bits (30), Expect = 1e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggatgcctcct 369
||||||||||||||||||||||||||||||
Sbjct: 32 ggatcaatgcgatccctttggatgcctcct 3
Score = 46.1 bits (23), Expect = 2e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 10 aaaggaggagtccaaagggatagcatgatcc 40
||||||| | |||||||||||||||||||||
Sbjct: 120 aaaggagaaatccaaagggatagcatgatcc 90
>48731_mtr-miR393b:pmrd
Length = 119
Score = 54.0 bits (27), Expect = 8e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggatgcct 366
|||||||||||||||||||||||||||
Sbjct: 27 ggatcaatgcgatccctttggatgcct 1
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 20 tccaaagggatagcatgatcc 40
|||||||||||||||||||||
Sbjct: 114 tccaaagggatagcatgatcc 94
>54470_sbi-miR393:pmrd
Length = 139
Score = 52.0 bits (26), Expect = 3e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggatgcctcct 369
||||||||||||||||||||||||| ||||
Sbjct: 42 ggatcaatgcgatccctttggatgcttcct 13
>48917_osa-miR393:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 1e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggatgc 364
|||||||||||||||||||||||||
Sbjct: 32 ggatcaatgcgatccctttggatgc 8
>55062_zma-miR393f:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 339 tggatcaatgcgatccctttgga 361
|||||||||||||||||||||||
Sbjct: 23 tggatcaatgcgatccctttgga 1
>55057_zma-miR393a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 339 tggatcaatgcgatccctttgga 361
|||||||||||||||||||||||
Sbjct: 23 tggatcaatgcgatccctttgga 1
>47287_ath-miRf10187-akr:pmrd
Length = 162
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggat 362
|||||||||||||||||||||||
Sbjct: 33 ggatcaatgcgatccctttggat 11
>47214_ath-miRf10114-akr:pmrd
Length = 131
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggat 362
|||||||||||||||||||||||
Sbjct: 31 ggatcaatgcgatccctttggat 9
>46999_ath-miR393b:pmrd
Length = 160
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggat 362
|||||||||||||||||||||||
Sbjct: 32 ggatcaatgcgatccctttggat 10
>46998_ath-miR393a:pmrd
Length = 133
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttggat 362
|||||||||||||||||||||||
Sbjct: 32 ggatcaatgcgatccctttggat 10
>54849_vvi-miR393a:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 8e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttgga 361
||||||||||||||||||||||
Sbjct: 32 ggatcaatgcgatccctttgga 11
>48373_bna-miR393:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 8e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 340 ggatcaatgcgatccctttgga 361
||||||||||||||||||||||
Sbjct: 22 ggatcaatgcgatccctttgga 1
>55063_zma-miR393g:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 341 gatcaatgcgatccctttgga 361
|||||||||||||||||||||
Sbjct: 21 gatcaatgcgatccctttgga 1
>55061_zma-miR393e:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 341 gatcaatgcgatccctttgga 361
|||||||||||||||||||||
Sbjct: 67 gatcaatgcgatccctttgga 87
>55060_zma-miR393d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 341 gatcaatgcgatccctttgga 361
|||||||||||||||||||||
Sbjct: 69 gatcaatgcgatccctttgga 89
>55059_zma-miR393c:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 341 gatcaatgcgatccctttgga 361
|||||||||||||||||||||
Sbjct: 23 gatcaatgcgatccctttgga 3
>55058_zma-miR393b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 341 gatcaatgcgatccctttgga 361
|||||||||||||||||||||
Sbjct: 23 gatcaatgcgatccctttgga 3
>55056_zma-miR393:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 341 gatcaatgcgatccctttgga 361
|||||||||||||||||||||
Sbjct: 41 gatcaatgcgatccctttgga 21
>51723_ptc-miR393d:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 341 gatcaatgcgatccctttgga 361
|||||||||||||||||||||
Sbjct: 31 gatcaatgcgatccctttgga 11
>51722_ptc-miR393c:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 341 gatcaatgcgatccctttgga 361
|||||||||||||||||||||
Sbjct: 31 gatcaatgcgatccctttgga 11
>48919_osa-miR393b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 341 gatcaatgcgatccctttgga 361
|||||||||||||||||||||
Sbjct: 47 gatcaatgcgatccctttgga 27
>48918_osa-miR393b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 341 gatcaatgcgatccctttgga 361
|||||||||||||||||||||
Sbjct: 47 gatcaatgcgatccctttgga 27
>48501_ghr-miR393:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 341 gatcaatgcgatccctttgga 361
|||||||||||||||||||||
Sbjct: 21 gatcaatgcgatccctttgga 1
