miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48428_cpt-miR408:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 68 ccatgcactgcctcttccctggctctc 94
|||||||||||||||||||||||||||
Sbjct: 68 ccatgcactgcctcttccctggctctc 94
>54892_vvi-miR408:pmrd
Length = 107
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 68 ccatgcactgcctcttccctggctct 93
||||||||||||||||||||||||||
Sbjct: 75 ccatgcactgcctcttccctggctct 100
>46892_aqc-miR408:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 66 ttccatgcactgcctcttccctggct 91
||||||||||||||||||||||||||
Sbjct: 26 ttccatgcactgcctcttccctggct 1
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 68 ccatgcactgcctcttccctggctc 92
|||||||||||||||||||||||||
Sbjct: 28 ccatgcactgcctcttccctggctc 4
>47031_ath-miR408:pmrd
Length = 218
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 ccatgcactgcctcttccctggctc 92
|||||||||||||||||||||||||
Sbjct: 118 ccatgcactgcctcttccctggctc 142
>51762_ptc-miR408:pmrd
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 68 ccatgcactgcctcttccctggct 91
||||||||||||||||||||||||
Sbjct: 74 ccatgcactgcctcttccctggct 97
>54690_tae-miR408:pmrd
Length = 187
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 tgcactgcctcttccctggctctcctc 97
|||||||||||||||||||||| ||||
Sbjct: 137 tgcactgcctcttccctggctcccctc 163
>51566_pta-miR408:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 atgcactgcctcttccctggctc 92
|||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggctc 86
>51397_ppt-miR408b:pmrd
Length = 144
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 catgcactgcctcttccctggct 91
|||||||||||||||||||||||
Sbjct: 92 catgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 catgcactgcctcttccctggct 91
|||||||||||||||||||||||
Sbjct: 74 catgcactgcctcttccctggct 96
>48317_bdi-miR408:pmrd
Length = 133
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tccatgcactgcctcttccctgg 89
|||||||||||||||||||||||
Sbjct: 66 tccatgcactgcctcttccctgg 88
>55104_zma-miR408:pmrd
Length = 191
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgcactgcctcttccctggctc 92
||||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggctc 174
>54649_sof-miR408d:pmrd
Length = 215
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgcactgcctcttccctggctc 92
||||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggctc 198
>54648_sof-miR408c:pmrd
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgcactgcctcttccctggctc 92
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>54647_sof-miR408b:pmrd
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgcactgcctcttccctggctc 92
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>54646_sof-miR408a:pmrd
Length = 283
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgcactgcctcttccctggctc 92
||||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggctc 266
>54585_smo-miR408:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 atgcactgcctcttccctggct 91
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>48975_osa-miR408:pmrd
Length = 213
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 tgcactgcctcttccctggctc 92
||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175
>54499_sbi-miR408:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 tgcactgcctcttccctggct 91
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
>54389_rco-miR408:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 tgcactgcctcttccctggct 91
|||||||||||||||||||||
Sbjct: 91 tgcactgcctcttccctggct 111
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 68 ccatgcactgcctcttccctg 88
|||||||||||||||||||||
Sbjct: 59 ccatgcactgcctcttccctg 79
