miRNEST 2.0, an integrative microRNA resource :: BLAST
>46993_ath-miR319b:pmrd
Length = 172
Score = 266 bits (134), Expect = 7e-72
Identities = 161/170 (94%)
Strand = Plus / Plus
Query: 41 agagagctttctttggtccactcatggagtaatatgtgagatttaattgactctcgactc 100
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagagctttcttcggtccactcatggagtaatatgtgagatttaattgactctcgactc 60
Query: 101 atccatccacataccaaatgaaagaatatgttcccatatggtaaatgaatgaatgattct 160
|| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct: 61 attcatccaaataccaaatgaaagaatttgttctcatatggtaaatgaatgaatgatgcg 120
Query: 161 agagacaaattgaatctttacttctctatgcttggactgaagggagctcc 210
||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 121 agagacaaattgagtcttcacttctctatgcttggactgaagggagctcc 170
>48788_nof-miR159:pmrd
Length = 192
Score = 69.9 bits (35), Expect = 9e-13
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 140 ggtaaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactg 199
|||||||||||||||||| || |||||||||| ||| || |||||| || ||||||||
Sbjct: 109 ggtaaatgaatgaatgatgctgtagacaaattggatcattgattctctctgattggactg 168
Query: 200 aagggagctcc 210
|||||||||||
Sbjct: 169 aagggagctcc 179
>48478_ech-miR159:pmrd
Length = 192
Score = 65.9 bits (33), Expect = 1e-11
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcgctagacaaattggatcattgattctctttgattggactgaa 170
Query: 202 gggagctcctttccttt 218
||||||||| |||||||
Sbjct: 171 gggagctcccttccttt 187
>54844_vvi-miR319c:pmrd
Length = 182
Score = 60.0 bits (30), Expect = 9e-10
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 141 gtaaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactga 200
|||||||| |||||||| | ||||||||||| ||||| | || || ||||||||||||
Sbjct: 100 gtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactga 159
Query: 201 agggagctcc 210
||||||||||
Sbjct: 160 agggagctcc 169
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 39 gaagagagctttctttggtccactcatgg 67
||||||||||||||| ||||||||||||
Sbjct: 8 gaagagagctttcttcagtccactcatgg 36
>54391_rin-miR159:pmrd
Length = 192
Score = 58.0 bits (29), Expect = 3e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatcattgattctctctgattggactgaa 170
Query: 202 gggagctcc 210
|||||||||
Sbjct: 171 gggagctcc 179
>48479_fal-miR159:pmrd
Length = 192
Score = 58.0 bits (29), Expect = 3e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 170
Query: 202 gggagctcc 210
|||||||||
Sbjct: 171 gggagctcc 179
>48429_crb-miR159:pmrd
Length = 194
Score = 58.0 bits (29), Expect = 3e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 113 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 172
Query: 202 gggagctcc 210
|||||||||
Sbjct: 173 gggagctcc 181
>48422_cor-miR159:pmrd
Length = 193
Score = 58.0 bits (29), Expect = 3e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 112 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 171
Query: 202 gggagctcc 210
|||||||||
Sbjct: 172 gggagctcc 180
>48421_cmi-miR159:pmrd
Length = 193
Score = 58.0 bits (29), Expect = 3e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 112 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 171
Query: 202 gggagctcc 210
|||||||||
Sbjct: 172 gggagctcc 180
>48415_bvl-miR159:pmrd
Length = 192
Score = 58.0 bits (29), Expect = 3e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatcattgattctctctgattggactgaa 170
Query: 202 gggagctcc 210
|||||||||
Sbjct: 171 gggagctcc 179
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 58.0 bits (29), Expect = 3e-09
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 87 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 28
Query: 202 gggagctcc 210
|||||||||
Sbjct: 27 gggagctcc 19
>46992_ath-miR319a:pmrd
Length = 176
Score = 58.0 bits (29), Expect = 3e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 104 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 163
Query: 202 gggagctcc 210
|||||||||
Sbjct: 164 gggagctcc 172
>46860_ape-miR159:pmrd
Length = 192
Score = 58.0 bits (29), Expect = 3e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatcattgattctctctgattggactgaa 170
Query: 202 gggagctcc 210
|||||||||
Sbjct: 171 gggagctcc 179
>46856_ahi-miR159:pmrd
Length = 192
Score = 58.0 bits (29), Expect = 3e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 170
Query: 202 gggagctcc 210
|||||||||
Sbjct: 171 gggagctcc 179
>46855_aha-miR159:pmrd
Length = 192
Score = 58.0 bits (29), Expect = 3e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 170
Query: 202 gggagctcc 210
|||||||||
Sbjct: 171 gggagctcc 179
>46846_acb-miR159:pmrd
Length = 191
Score = 58.0 bits (29), Expect = 3e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 110 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 169
Query: 202 gggagctcc 210
|||||||||
Sbjct: 170 gggagctcc 178
>51710_ptc-miR319d:pmrd
Length = 193
Score = 54.0 bits (27), Expect = 5e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 176 ctttacttctctatgcttggactgaagggagctcc 210
|||| ||||||| ||||||||||||||||||||||
Sbjct: 149 cttttcttctctgtgcttggactgaagggagctcc 183
>51709_ptc-miR319c:pmrd
Length = 196
Score = 54.0 bits (27), Expect = 5e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 176 ctttacttctctatgcttggactgaagggagctcc 210
|||| ||||||| ||||||||||||||||||||||
Sbjct: 152 cttttcttctctgtgcttggactgaagggagctcc 186
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 40 aagagagctttctttggtccactcatgga 68
|||||||||||||| |||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgga 37
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 52.0 bits (26), Expect = 2e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 176 ctttacttctctatgcttggactgaagggagctc 209
|||| ||||||| |||||||||||||||||||||
Sbjct: 137 cttttcttctctgtgcttggactgaagggagctc 170
>48572_gma-miR319a:pmrd
Length = 207
Score = 52.0 bits (26), Expect = 2e-07
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 145 atgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaaggg 204
|||| |||||||| | ||||||||||||||||| | || || | ||||||||||||||
Sbjct: 122 atgagtgaatgatgcgggagacaaattgaatcttaagtttcctgtacttggactgaaggg 181
Query: 205 agctcc 210
||||||
Sbjct: 182 agctcc 187
Score = 40.1 bits (20), Expect = 8e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 40 aagagagctttctttggtccactcatgg 67
|||||||||||||| ||||||||||||
Sbjct: 19 aagagagctttcttcagtccactcatgg 46
>54754_tar-miR159:pmrd
Length = 192
Score = 50.1 bits (25), Expect = 8e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 182 ttctctatgcttggactgaagggagctcc 210
||||||||| |||||||||||||||||||
Sbjct: 151 ttctctatgattggactgaagggagctcc 179
>54670_svi-miR159:pmrd
Length = 191
Score = 50.1 bits (25), Expect = 8e-07
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| || || |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattgggtcattgattctctctgattggactgaa 170
Query: 202 gggagctcc 210
|||||||||
Sbjct: 171 gggagctcc 179
>48694_mma-miR159:pmrd
Length = 192
Score = 50.1 bits (25), Expect = 8e-07
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
|||||||||||||||| | |||||||||| || || |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattgggtcattgattctctttgattggactgaa 170
Query: 202 gggagctcc 210
|||||||||
Sbjct: 171 gggagctcc 179
>48476_dso-miR159:pmrd
Length = 192
Score = 50.1 bits (25), Expect = 8e-07
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 142 taaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaa 201
||||||| |||||||| | |||||||||| ||| || |||||| || ||||||||||
Sbjct: 111 taaatgactgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 170
Query: 202 gggagctcc 210
|||||||||
Sbjct: 171 gggagctcc 179
>54686_tae-miR319a:pmrd
Length = 196
Score = 48.1 bits (24), Expect = 3e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 175 tctttacttctctatgcttggactgaagggagctcc 210
||||| || ||| |||||||||||||||||||||||
Sbjct: 160 tctttcctcctccatgcttggactgaagggagctcc 195
>51713_ptc-miR319g:pmrd
Length = 204
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 189 tgcttggactgaagggagctcctt 212
||||||||||||||||||||||||
Sbjct: 173 tgcttggactgaagggagctcctt 196
>51712_ptc-miR319f:pmrd
Length = 202
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 189 tgcttggactgaagggagctcctt 212
||||||||||||||||||||||||
Sbjct: 171 tgcttggactgaagggagctcctt 194
>51707_ptc-miR319a:pmrd
Length = 188
Score = 48.1 bits (24), Expect = 3e-06
Identities = 69/80 (86%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 141 gtaaatgaatgaatgattctagagacaaattgaatcttta-cttctctatgcttggactg 199
|||||||| |||||||| | ||||||||||||||| | | |||| || | |||||||||
Sbjct: 109 gtaaatgagtgaatgatgcgggagacaaattgaatcctaagcttc-ctgtacttggactg 167
Query: 200 aagggagct-cctttccttt 218
||||||||| ||||||||||
Sbjct: 168 aagggagctccctttccttt 187
Score = 40.1 bits (20), Expect = 8e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 40 aagagagctttctttggtccactcatgg 67
|||||||||||||| ||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgg 36
>51351_ppl-miR319:pmrd
Length = 204
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 189 tgcttggactgaagggagctcctt 212
||||||||||||||||||||||||
Sbjct: 171 tgcttggactgaagggagctcctt 194
>48573_gma-miR319b:pmrd
Length = 208
Score = 48.1 bits (24), Expect = 3e-06
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 143 aaatgaatgaatgattctagagacaaattgaatctttacttctctatgcttggactgaag 202
|||||| |||||||| | |||||||||||| |||| | || || | ||||||||||||
Sbjct: 121 aaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttggactgaag 180
Query: 203 ggagctcc 210
||||||||
Sbjct: 181 ggagctcc 188
>54846_vvi-miR319f:pmrd
Length = 193
Score = 46.1 bits (23), Expect = 1e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 176 ctttacttctctatgcttggactgaagggagctcc 210
|||| ||| ||| ||||||||||||||||||||||
Sbjct: 146 cttttcttgtctgtgcttggactgaagggagctcc 180
>54380_pvu-miR319c:pmrd
Length = 734
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 190 gcttggactgaagggagctcctt 212
|||||||||||||||||||||||
Sbjct: 408 gcttggactgaagggagctcctt 430
>51708_ptc-miR319b:pmrd
Length = 185
Score = 46.1 bits (23), Expect = 1e-05
Identities = 61/71 (85%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 141 gtaaatgaatgaatgattctagagacaaattgaatcttta-cttctctatgcttggactg 199
|||||||||||| |||| | |||||||||| |||||| | |||| |||| ||||||||
Sbjct: 106 gtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttc-ctatcattggactg 164
Query: 200 aagggagctcc 210
|||||||||||
Sbjct: 165 aagggagctcc 175
>48574_gma-miR319c:pmrd
Length = 221
Score = 46.1 bits (23), Expect = 1e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 182 ttctctatgcttggactgaagggagctcctt 212
|||||| ||||||||||||| ||||||||||
Sbjct: 173 ttctctgtgcttggactgaaaggagctcctt 203
>51385_ppt-miR319b:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 cttggactgaagggagctcct 211
|||||||||||||||||||||
Sbjct: 140 cttggactgaagggagctcct 160
>46994_ath-miR319c:pmrd
Length = 199
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctcctt 212
|||||||||||||||||||||
Sbjct: 170 ttggactgaagggagctcctt 190
>46884_aqc-miR319:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 2e-04
Identities = 62/73 (84%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 139 tggtaaatgaatgaatgattctagagacaaattgaatctt-tacttctctatgcttggac 197
||||||||||||||||||| | |||| ||||| ||||| | ||||| | | |||||||
Sbjct: 102 tggtaaatgaatgaatgatccgggagattaattggatcttatgcttct-tgtacttggac 160
Query: 198 tgaagggagctcc 210
|||||||||||||
Sbjct: 161 tgaagggagctcc 173
>54845_vvi-miR319e:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctcct 211
||||||||||||||||||||
Sbjct: 77 ttggactgaagggagctcct 96
>54843_vvi-miR319b:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 cttggactgaagggagctcc 210
||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctcc 181
>54583_smo-miR319:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 cttggactgaagggagctcc 210
||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcc 204
>52398_ptc-miRf10576-akr:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctcct 211
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>51714_ptc-miR319h:pmrd
Length = 195
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctcct 211
||||||||||||||||||||
Sbjct: 165 ttggactgaagggagctcct 184
>51711_ptc-miR319e:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 ttggactgaagggagctcct 211
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>51390_ppt-miR319e:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 cttggactgaagggagctcc 210
||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166
>51389_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 cttggactgaagggagctcc 210
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51388_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 cttggactgaagggagctcc 210
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51387_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 cttggactgaagggagctcc 210
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51386_ppt-miR319c:pmrd
Length = 189
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 cttggactgaagggagctcc 210
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
>51384_ppt-miR319a:pmrd
Length = 169
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 cttggactgaagggagctcc 210
||||||||||||||||||||
Sbjct: 148 cttggactgaagggagctcc 167
>48687_ltu-miR319:pmrd
Length = 167
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 cttggactgaagggagctcc 210
||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166
