miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53950_ptc-miRf12128-akr:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 30 gtatattccgacggacacattccgtcggta 59
|||||| ||||||||| |||||||||||||
Sbjct: 71 gtatataccgacggacccattccgtcggta 100
>53704_ptc-miRf11882-akr:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 38 cgacggacacattccgtcggtatattccga 67
||||||||| ||||||||||||||| ||||
Sbjct: 1 cgacggacatattccgtcggtatataccga 30
>53503_ptc-miRf11681-akr:pmrd
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 30 gtatattccgacggacacattccgtcggtatattccga 67
||||||||||||||| | |||||||| |||||| ||||
Sbjct: 51 gtatattccgacggaaatattccgtctgtatataccga 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 attccgtcggtatattccga 67
||||||||||||||||||||
Sbjct: 42 attccgtcggtatattccga 61
>53501_ptc-miRf11679-akr:pmrd
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 30 gtatattccgacggacacattccgtcggtatattccga 67
||||||||||||||| | |||||||| |||||| ||||
Sbjct: 51 gtatattccgacggaaatattccgtctgtatataccga 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 attccgtcggtatattccga 67
||||||||||||||||||||
Sbjct: 42 attccgtcggtatattccga 61
>54186_ptc-miRf12364-akr:pmrd
Length = 114
Score = 42.1 bits (21), Expect = 5e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 30 gtatattccgacggacacattccgtcggtatat 62
|||||| |||||||| ||||||||||||||||
Sbjct: 40 gtatataccgacggaatcattccgtcggtatat 8
>53703_ptc-miRf11881-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 39 gacggacacattccgtcggtatattccga 67
|||||||| ||||||||||||||| ||||
Sbjct: 1 gacggacatattccgtcggtatataccga 29
>53504_ptc-miRf11682-akr:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 5e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 30 gtatattccgacggacacattccgtcggtatat 62
||||||||||||||| | |||||||| ||||||
Sbjct: 42 gtatattccgacggaaatattccgtctgtatat 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 attccgtcggtatattccga 67
||||||||||||||||||||
Sbjct: 33 attccgtcggtatattccga 52
>53502_ptc-miRf11680-akr:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 5e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 30 gtatattccgacggacacattccgtcggtatat 62
||||||||||||||| | |||||||| ||||||
Sbjct: 42 gtatattccgacggaaatattccgtctgtatat 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48 attccgtcggtatattccga 67
||||||||||||||||||||
Sbjct: 33 attccgtcggtatattccga 52
>52644_ptc-miRf10822-akr:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 37 ccgacggacacattccgtcggtata 61
||||||||||| |||||||||||||
Sbjct: 31 ccgacggacacgttccgtcggtata 55
>52159_ptc-miRf10337-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 5e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 30 gtatattccgacggacacattccgtcggtatat 62
|||||| |||||||| ||||||||||||||||
Sbjct: 73 gtatataccgacggaatcattccgtcggtatat 105
>53401_ptc-miRf11579-akr:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 24 ccgttagtatattccgacggacacattccgtcggtatattccga 67
|||| ||||||| |||| ||| | ||||||||||||||| ||||
Sbjct: 45 ccgtcagtatataccgatggaaatattccgtcggtatataccga 2
>51876_ptc-miRf10054-akr:pmrd
Length = 150
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 37 ccgacggacacattccgtcggtat 60
|||||||| |||||||||||||||
Sbjct: 32 ccgacggatacattccgtcggtat 9
>54067_ptc-miRf12245-akr:pmrd
Length = 117
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 37 ccgacggacacattccgtcggtatattccga 67
|||||||| | ||||||||||||||| ||||
Sbjct: 104 ccgacggaaaaattccgtcggtatataccga 74
>54066_ptc-miRf12244-akr:pmrd
Length = 117
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 37 ccgacggacacattccgtcggtatattccga 67
|||||||| | ||||||||||||||| ||||
Sbjct: 104 ccgacggaaaaattccgtcggtatataccga 74
>53863_ptc-miRf12041-akr:pmrd
Length = 113
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 37 ccgacggacacattccgtcggtatattccga 67
|||||||| |||||||||||||||| ||||
Sbjct: 12 ccgacggaatcattccgtcggtatataccga 42
>53765_ptc-miRf11943-akr:pmrd
Length = 113
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 37 ccgacggacacattccgtcggtatattccga 67
|||||||| |||||||||||||||| ||||
Sbjct: 12 ccgacggaatcattccgtcggtatataccga 42
>53408_ptc-miRf11586-akr:pmrd
Length = 113
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 37 ccgacggacacattccgtcggtatattccga 67
|||||||| |||||||||||||||| ||||
Sbjct: 12 ccgacggaatcattccgtcggtatataccga 42
>53259_ptc-miRf11437-akr:pmrd
Length = 105
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 37 ccgacggacacattccgtcggtatattccga 67
|||||||| | ||||||||||||||| ||||
Sbjct: 8 ccgacggaaaaattccgtcggtatataccga 38
>53257_ptc-miRf11435-akr:pmrd
Length = 105
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 37 ccgacggacacattccgtcggtatattccga 67
|||||||| | ||||||||||||||| ||||
Sbjct: 8 ccgacggaaaaattccgtcggtatataccga 38
>52863_ptc-miRf11041-akr:pmrd
Length = 65
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 30 gtatattccgacggacacattccgtcggtat 60
|||||| ||||||||||||||| |||||||
Sbjct: 50 gtatataccgacggacacattcgatcggtat 20
