miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>54388_rco-miR168:pmrd
          Length = 156

 Score = 97.6 bits (49), Expect = 3e-21
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                           
Query: 8  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 56
          |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49



 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                        
Query: 123 gaattggatcccgccttgcatcaactgaatcggagaccgcggtga 167
           |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcgaagaccggggtga 154




>48560_gma-miR168:pmrd
          Length = 125

 Score = 83.8 bits (42), Expect = 4e-17
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 122 cgaattggatcccgccttgcatcaactgaatcggagaccgcggtga 167
           |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 78  cgaattggatcccgccttgcatcaactgaatcggaggccgcggtga 123



 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 14 gcggtctctaattcgcttggtgcaggtcgggaac 47
          ||||||||||||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaac 40




>46958_ath-miR168b:pmrd
          Length = 124

 Score = 83.8 bits (42), Expect = 4e-17
 Identities = 48/50 (96%)
 Strand = Plus / Plus

                                                            
Query: 8  ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggctg 57
          ||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 1  ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattggctg 50



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 131 tcccgccttgcatcaactgaatcggagaccgcggtga 167
           ||||| |||| |||||||||||||||| ||| |||||
Sbjct: 88  tcccgtcttgtatcaactgaatcggagtccgaggtga 124




>51651_ptc-miR168b:pmrd
          Length = 136

 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 16 ggtctctaattcgcttggtgcaggtcgggaactgatt 52
          |||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaactgatt 37



 Score = 71.9 bits (36), Expect = 2e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 123 gaattggatcccgccttgcatcaactgaatcggaga 158
           ||||||||||||||||||||||||||||||||||||
Sbjct: 101 gaattggatcccgccttgcatcaactgaatcggaga 136




>51650_ptc-miR168a:pmrd
          Length = 160

 Score = 71.9 bits (36), Expect = 2e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 122 cgaattggatcccgccttgcatcaactgaatcggag 157
           ||||||||||||||||||||||||||||||||||||
Sbjct: 124 cgaattggatcccgccttgcatcaactgaatcggag 159



 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 16 ggtctctaattcgcttggtgcaggtcgggaactgatt 52
          ||||||| |||||||||||||||||||||||||||||
Sbjct: 1  ggtctctgattcgcttggtgcaggtcgggaactgatt 37




>48349_bna-miR168:pmrd
          Length = 133

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                        
Query: 12 cggcggtctctaattcgcttggtgcaggtcgggaactgattggctg 57
          |||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct: 4  cggcggcctctgactcgcttggtgcaggtcgggaactgattggctg 49




>54802_vvi-miR168:pmrd
          Length = 132

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 16 ggtctctaattcgcttggtgcaggtcgggaac 47
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaac 32



 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 129 gatcccgccttgcatcaactgaatcggagac 159
           |||||||||||||||||||||||||||||||
Sbjct: 99  gatcccgccttgcatcaactgaatcggagac 129




>47339_ath-miRf10239-akr:pmrd
          Length = 129

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 125 attggatcccgccttgcatcaactgaatcgga 156
           ||||||||||||||||||||||||||||||||
Sbjct: 91  attggatcccgccttgcatcaactgaatcgga 122



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 24 attcgcttggtgcaggtcgggaac 47
          ||||||||||||||||||||||||
Sbjct: 11 attcgcttggtgcaggtcgggaac 34




>46957_ath-miR168a:pmrd
          Length = 138

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 125 attggatcccgccttgcatcaactgaatcgga 156
           ||||||||||||||||||||||||||||||||
Sbjct: 96  attggatcccgccttgcatcaactgaatcgga 127



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 24 attcgcttggtgcaggtcgggaac 47
          ||||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcgggaac 39




>54375_pts-miR168b:pmrd
          Length = 140

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 122 cgaattggatcccgccttgcatcaactga 150
           |||||||||||||||||||||||||||||
Sbjct: 112 cgaattggatcccgccttgcatcaactga 140



 Score = 54.0 bits (27), Expect = 4e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 26 tcgcttggtgcaggtcgggaactgatt 52
          |||||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgatt 27




>54374_pts-miR168a:pmrd
          Length = 118

 Score = 56.0 bits (28), Expect = 9e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 123 gaattggatcccgccttgcatcaactga 150
           ||||||||||||||||||||||||||||
Sbjct: 91  gaattggatcccgccttgcatcaactga 118



 Score = 54.0 bits (27), Expect = 4e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 26 tcgcttggtgcaggtcgggaactgatt 52
          |||||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgatt 27




>54366_ptr-miR168:pmrd
          Length = 118

 Score = 56.0 bits (28), Expect = 9e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 123 gaattggatcccgccttgcatcaactga 150
           ||||||||||||||||||||||||||||
Sbjct: 91  gaattggatcccgccttgcatcaactga 118



 Score = 54.0 bits (27), Expect = 4e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 26 tcgcttggtgcaggtcgggaactgatt 52
          |||||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgatt 27




>55000_zma-miR168b:pmrd
          Length = 104

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 128 ggatcccgccttgcatcaactgaatcggag 157
           ||||||||||||||||||| ||||||||||
Sbjct: 63  ggatcccgccttgcatcaagtgaatcggag 92




>46959_ath-miR168m:pmrd
          Length = 104

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 125 attggatcccgccttgcatcaactga 150
           ||||||||||||||||||||||||||
Sbjct: 79  attggatcccgccttgcatcaactga 104



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 26 tcgcttggtgcaggtcgggaac 47
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22




>48649_hte-miR168:pmrd
          Length = 140

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 26 tcgcttggtgcaggtcgggaactg 49
          ||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactg 24




>54999_zma-miR168a:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 128 ggatcccgccttgcatcaactgaatcggag 157
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>54637_sof-miR168b:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 128 ggatcccgccttgcatcaactgaatcggag 157
           ||||||||||||||| ||| ||||||||||
Sbjct: 62  ggatcccgccttgcaccaagtgaatcggag 91




>54636_sof-miR168a:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 128 ggatcccgccttgcatcaactgaatcggag 157
           ||||||||||||||| ||| ||||||||||
Sbjct: 63  ggatcccgccttgcaccaagtgaatcggag 92




>48873_osa-miR168a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 128 ggatcccgccttgcatcaactgaatcggag 157
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>48872_osa-miR168a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 128 ggatcccgccttgcatcaactgaatcggag 157
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>48871_osa-miR168a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 128 ggatcccgccttgcatcaactgaatcggag 157
           ||||||||||||||| ||| ||||||||||
Sbjct: 55  ggatcccgccttgcaccaagtgaatcggag 84




>54665_stu-miR168:pmrd
          Length = 133

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 126 ttggatcccgccttgcatcaactga 150
           |||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 26 tcgcttggtgcaggtcggga 45
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>54546_sly-miR168:pmrd
          Length = 145

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 26 tcgcttggtgcaggtcggga 45
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20