miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52398_ptc-miRf10576-akr:pmrd
Length = 192
Score = 105 bits (53), Expect = 2e-23
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 163 tgcatggtgtgggagcaactccttccacatactttgcccacccattggactgaagggagc 222
|||||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||
Sbjct: 120 tgcatggtgtgggagcaactccttccgcatgctttgctcgcccattggactgaagggagc 179
Query: 223 tcctggttt 231
|||||||||
Sbjct: 180 tcctggttt 188
Score = 67.9 bits (34), Expect = 3e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 3 ggggctaaggagctcctttcagtccaatacagggggcagagatgtggatagagctgccat 62
|||||| ||| |||||||| |||||||||| | |||| |||| | || ||||||||||||
Sbjct: 4 ggggctgaggtgctccttttagtccaatacggagggctgagaagcggctagagctgccat 63
Query: 63 ctcatgcatt 72
||||||||||
Sbjct: 64 ctcatgcatt 73
>51711_ptc-miR319e:pmrd
Length = 192
Score = 105 bits (53), Expect = 2e-23
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 163 tgcatggtgtgggagcaactccttccacatactttgcccacccattggactgaagggagc 222
|||||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||
Sbjct: 120 tgcatggtgtgggagcaactccttccgcatgctttgctcgcccattggactgaagggagc 179
Query: 223 tcctggttt 231
|||||||||
Sbjct: 180 tcctggttt 188
Score = 67.9 bits (34), Expect = 3e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 3 ggggctaaggagctcctttcagtccaatacagggggcagagatgtggatagagctgccat 62
|||||| ||| |||||||| |||||||||| | |||| |||| | || ||||||||||||
Sbjct: 4 ggggctgaggtgctccttttagtccaatacggagggctgagaagcggctagagctgccat 63
Query: 63 ctcatgcatt 72
||||||||||
Sbjct: 64 ctcatgcatt 73
>51714_ptc-miR319h:pmrd
Length = 195
Score = 97.6 bits (49), Expect = 4e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 163 tgcatggtgtgggagcaactccttccacatactttgcccacccattggactgaagggagc 222
|||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||
Sbjct: 121 tgcatggtgtgggagcaactccttccgcatgctttgttcgcccattggactgaagggagc 180
Query: 223 tcctggttt 231
|||||||||
Sbjct: 181 tcctggttt 189
Score = 60.0 bits (30), Expect = 8e-10
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 3 ggggctaaggagctcctttcagtccaatacagggggcagagatgtggatagagctgccat 62
|||||||| | |||||||| ||||||||| | |||| |||| | || ||||||||||||
Sbjct: 6 ggggctaaagtgctccttttagtccaataaggagggctgagaagcggctagagctgccat 65
Query: 63 ctcatgcatt 72
||||||||||
Sbjct: 66 ctcatgcatt 75
>54847_vvi-miR319g:pmrd
Length = 222
Score = 69.9 bits (35), Expect = 8e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 151 agtttagcccgatgcatggtgtgggagcaactccttccacatactttgcccacccattgg 210
||||||||| |||||||| |||||||||||||| || || |||||||||| ||||||
Sbjct: 137 agtttagcctgatgcatgacatgggagcaactcct-ccgcacgctttgcccactcattgg 195
Query: 211 actgaagggagctcc 225
|||||||||||||||
Sbjct: 196 actgaagggagctcc 210
Score = 50.1 bits (25), Expect = 8e-07
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 12 gagctcctttcagtccaatacagggggcagagatgtggatagagctgccatctcatgcat 71
|||||||||| ||||||||| || |||| ||| | || |||||||||||||||||||
Sbjct: 12 gagctccttttagtccaataaagagggctgaggggcggccagagctgccatctcatgcac 71
Query: 72 tgggttatgctta 84
| || ||||||||
Sbjct: 72 ttggctatgctta 84
>51708_ptc-miR319b:pmrd
Length = 185
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 205 cattggactgaagggagctcc 225
|||||||||||||||||||||
Sbjct: 155 cattggactgaagggagctcc 175
>48574_gma-miR319c:pmrd
Length = 221
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 9 aaggagctcctttcagtccaa 29
|||||||||||||||||||||
Sbjct: 203 aaggagctcctttcagtccaa 183
>54845_vvi-miR319e:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 207 ttggactgaagggagctcct 226
||||||||||||||||||||
Sbjct: 77 ttggactgaagggagctcct 96
>54754_tar-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>54670_svi-miR159:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>54391_rin-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>54380_pvu-miR319c:pmrd
Length = 734
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 207 ttggactgaagggagctcct 226
||||||||||||||||||||
Sbjct: 410 ttggactgaagggagctcct 429
>51713_ptc-miR319g:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 207 ttggactgaagggagctcct 226
||||||||||||||||||||
Sbjct: 176 ttggactgaagggagctcct 195
>51712_ptc-miR319f:pmrd
Length = 202
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 207 ttggactgaagggagctcct 226
||||||||||||||||||||
Sbjct: 174 ttggactgaagggagctcct 193
>51385_ppt-miR319b:pmrd
Length = 160
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 207 ttggactgaagggagctcct 226
||||||||||||||||||||
Sbjct: 141 ttggactgaagggagctcct 160
>51351_ppl-miR319:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 207 ttggactgaagggagctcct 226
||||||||||||||||||||
Sbjct: 174 ttggactgaagggagctcct 193
>48788_nof-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>48694_mma-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>48479_fal-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>48478_ech-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>48476_dso-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>48429_crb-miR159:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 162 attggactgaagggagctcc 181
>48422_cor-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 161 attggactgaagggagctcc 180
>48421_cmi-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 161 attggactgaagggagctcc 180
>48415_bvl-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 38 attggactgaagggagctcc 19
>46994_ath-miR319c:pmrd
Length = 199
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 207 ttggactgaagggagctcct 226
||||||||||||||||||||
Sbjct: 170 ttggactgaagggagctcct 189
>46992_ath-miR319a:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 153 attggactgaagggagctcc 172
>46860_ape-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>46856_ahi-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>46855_aha-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 160 attggactgaagggagctcc 179
>46846_acb-miR159:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 206 attggactgaagggagctcc 225
||||||||||||||||||||
Sbjct: 159 attggactgaagggagctcc 178
