miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46912_ath-miR156c:pmrd
Length = 104
Score = 137 bits (69), Expect = 2e-33
Identities = 85/89 (95%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacacaaacgcactt-gcatgttcgatgcacttgcttctcttg 70
||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 12 tgacagaagagagtgagcacacaaaggcactttgcatgttcgatgcatttgcttctcttg 71
Query: 71 cgtgctcactgctttatctgtcagattcc 99
||||||||||||| |||||||||||||||
Sbjct: 72 cgtgctcactgctctatctgtcagattcc 100
>46910_ath-miR156a:pmrd
Length = 123
Score = 89.7 bits (45), Expect = 4e-19
Identities = 80/89 (89%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacacaaacgcactt-gcatgttcgatgcacttgcttctcttg 70
||||||||||||||||||||||||| ||| || |||| | | |||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacacaaaggcaatttgcatat-cattgcacttgcttctcttg 79
Query: 71 cgtgctcactgctttatctgtcagattcc 99
||||||||||||| | |||||||||||||
Sbjct: 80 cgtgctcactgctctttctgtcagattcc 108
>48336_bna-miR156a:pmrd
Length = 82
Score = 65.9 bits (33), Expect = 5e-12
Identities = 73/84 (86%), Gaps = 3/84 (3%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacacaaacgcact-tgcatgttcgatgcacttgcttctcttg 70
||||||||||||||||||||||||| | | | ||||| | | |||| ||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacaaaagtaatctgcatatac--tgcatttgcttctcttg 58
Query: 71 cgtgctcactgctttatctgtcag 94
||||||||||||| | ||||||||
Sbjct: 59 cgtgctcactgctctttctgtcag 82
>47667_ath-miRf10567-akr:pmrd
Length = 98
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagtgagcacacaaa 36
||||||||||||||||||||||||||
Sbjct: 5 ttgacagaagagagtgagcacacaaa 30
>46913_ath-miR156d:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagtgagcacacaaa 36
||||||||||||||||||||||||||
Sbjct: 17 ttgacagaagagagtgagcacacaaa 42
>54912_zma-miR156b:pmrd
Length = 124
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tttgacagaagagagtgagcacaca 34
|||||||||||||||||||||||||
Sbjct: 19 tttgacagaagagagtgagcacaca 43
>52469_ptc-miRf10647-akr:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 ttgacagaagagagtgagcacaca 34
||||||||||||||||||||||||
Sbjct: 94 ttgacagaagagagtgagcacaca 71
>51595_ptc-miR156e:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagtgagcacaca 34
||||||||||||||||||||||||
Sbjct: 10 ttgacagaagagagtgagcacaca 33
>51594_ptc-miR156d:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagtgagcacaca 34
||||||||||||||||||||||||
Sbjct: 10 ttgacagaagagagtgagcacaca 33
>48806_osa-miR156f:pmrd
Length = 186
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagtgagcacaca 34
||||||||||||||||||||||||
Sbjct: 3 ttgacagaagagagtgagcacaca 26
>48491_ghr-miR156d:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 tttgacagaagagagtgagcacac 33
||||||||||||||||||||||||
Sbjct: 7 tttgacagaagagagtgagcacac 30
>54924_zma-miR156o:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>54922_zma-miR156m:pmrd
Length = 83
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>54914_zma-miR156d:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagtgagcacac 33
|||||||||||||||||||||||
Sbjct: 15 ttgacagaagagagtgagcacac 37
>54913_zma-miR156c:pmrd
Length = 139
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacaca 43
>54911_zma-miR156a:pmrd
Length = 152
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 18 tgacagaagagagtgagcacaca 40
>54768_vvi-miR156c:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>54767_vvi-miR156b:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>54402_sbi-miR157:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagtgagcacac 33
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacac 23
>54401_sbi-miR156i:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacaca 25
>54395_sbi-miR156c:pmrd
Length = 95
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>54394_sbi-miR156b:pmrd
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>53789_ptc-miRf11967-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacaca 25
>51926_ptc-miRf10104-akr:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 8 tgacagaagagagtgagcacaca 30
>51596_ptc-miR156f:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>51593_ptc-miR156c:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>51592_ptc-miR156b:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>51591_ptc-miR156a:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>51354_ppr-miR156:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>49442_osa-miRf10227-akr:pmrd
Length = 93
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 89 tgacagaagagagtgagcacaca 67
>48810_osa-miR156j:pmrd
Length = 165
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagtgagcacac 33
|||||||||||||||||||||||
Sbjct: 41 ttgacagaagagagtgagcacac 63
>48808_osa-miR156h:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagtgagcacac 33
|||||||||||||||||||||||
Sbjct: 8 ttgacagaagagagtgagcacac 30
>48807_osa-miR156g:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 4 tgacagaagagagtgagcacaca 26
>48804_osa-miR156d:pmrd
Length = 129
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagtgagcacac 33
|||||||||||||||||||||||
Sbjct: 19 ttgacagaagagagtgagcacac 41
>48803_osa-miR156c:pmrd
Length = 149
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 29 tgacagaagagagtgagcacaca 51
>48802_osa-miR156b:pmrd
Length = 176
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 43 tgacagaagagagtgagcacaca 65
>48795_oru-miR156:pmrd
Length = 93
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacaca 24
>48652_hvv-miR156a:pmrd
Length = 394
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>48489_ghr-miR156b:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacaca 25
>48488_ghr-miR156a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 9 tgacagaagagagtgagcacaca 31
>48248_ath-miRf11148-akr:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 96 tgacagaagagagtgagcacaca 74
>47357_ath-miRf10257-akr:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacaca 25
>47356_ath-miRf10256-akr:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacaca 25
>46915_ath-miR156f:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacaca 43
>46914_ath-miR156e:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacaca 34
|||||||||||||||||||||||
Sbjct: 7 tgacagaagagagtgagcacaca 29
>54923_zma-miR156n:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacac 33
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54919_zma-miR156i:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacac 33
||||||||||||||||||||||
Sbjct: 13 tgacagaagagagtgagcacac 34
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 gcgtgctcactgctttatctgtca 93
|||||||||||||| |||||||||
Sbjct: 76 gcgtgctcactgctctatctgtca 99
>54918_zma-miR156h:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacac 33
||||||||||||||||||||||
Sbjct: 20 tgacagaagagagtgagcacac 41
>54915_zma-miR156e:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacac 33
||||||||||||||||||||||
Sbjct: 20 tgacagaagagagtgagcacac 41
>54758_tre-miR156:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagagagtgagcaca 32
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>54656_stu-miR156a:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacac 33
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54400_sbi-miR156h:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacac 33
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>54399_sbi-miR156g:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacac 33
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 gcgtgctcactgctttatctgtca 93
|||||||||||||| |||||||||
Sbjct: 63 gcgtgctcactgctctatctgtca 86
>54393_sbi-miR156a:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacac 33
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>49326_osa-miRf10111-akr:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacac 33
||||||||||||||||||||||
Sbjct: 7 tgacagaagagagtgagcacac 28
>48813_osa-miR156m:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacac 33
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>48809_osa-miR156i:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacac 33
||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacac 24
>48805_osa-miR156e:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacac 33
||||||||||||||||||||||
Sbjct: 10 tgacagaagagagtgagcacac 31
>48801_osa-miR156a:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacac 33
||||||||||||||||||||||
Sbjct: 7 tgacagaagagagtgagcacac 28
>48425_cpt-miR156a:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacac 33
||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacac 32
>46916_ath-miR156g:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 gacagaagagagtgagcacaca 34
||||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacaca 33
