miRNEST 2.0, an integrative microRNA resource :: BLAST
>48578_gma-miR396a:pmrd
Length = 140
Score = 65.9 bits (33), Expect = 9e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 111 ttttggggttcaataaagctgtgggaagatacatatagagtcaac 155
||||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct: 96 ttttgcggttcaataaagctgtgggaagatacagatagggtcaac 140
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 15 ctctttttgtacttttccacagctttcttgaactgcat 52
|||| |||||| | ||||||||||||||||||||||||
Sbjct: 7 ctctctttgtattcttccacagctttcttgaactgcat 44
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 60.0 bits (30), Expect = 5e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 112 tttggggttcaataaagctgtgggaagatacatatagagtca 153
|||| ||||||||||||||||||||||||||| | |||||||
Sbjct: 124 tttgcggttcaataaagctgtgggaagatacagacagagtca 165
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgca 51
|||||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaactgca 40
>47008_ath-miR396a:pmrd
Length = 151
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 112 tttggggttcaataaagctgtgggaagataca 143
|||| |||||||||||||||||||||||||||
Sbjct: 117 tttgcggttcaataaagctgtgggaagataca 148
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgca 51
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 117 ggttcaataaagctgtgggaagataca 143
|||||||||||||||||||||||||||
Sbjct: 103 ggttcaataaagctgtgggaagataca 129
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgca 51
|||||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaactgca 31
>51735_ptc-miR396b:pmrd
Length = 132
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 117 ggttcaataaagctgtgggaagataca 143
|||||||||||||||||||||||||||
Sbjct: 105 ggttcaataaagctgtgggaagataca 131
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 tttgtacttttccacagctttcttgaactgca 51
|||||| | |||||||||||||||||||||||
Sbjct: 2 tttgtattcttccacagctttcttgaactgca 33
>51734_ptc-miR396a:pmrd
Length = 123
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 117 ggttcaataaagctgtgggaagataca 143
|||||||||||||||||||||||||||
Sbjct: 96 ggttcaataaagctgtgggaagataca 122
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgca 51
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
>48680_lja-miR396:pmrd
Length = 108
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 111 ttttggggttcaataaagctgtgggaagata 141
||||| |||||||||||||||||||||||||
Sbjct: 69 ttttgcggttcaataaagctgtgggaagata 99
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 20 tttgtacttttccacagctttcttgaactgcat 52
|||||| | ||||||||||||||||||||||||
Sbjct: 7 tttgtattcttccacagctttcttgaactgcat 39
>54871_vvi-miR396d:pmrd
Length = 120
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 117 ggttcaataaagctgtgggaagatac 142
||||||||||||||||||||||||||
Sbjct: 89 ggttcaataaagctgtgggaagatac 114
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 20 tttgtacttttccacagctttcttgaactgcat 52
|||||| | ||||||||||||||||||||||||
Sbjct: 2 tttgtattcttccacagctttcttgaactgcat 34
>51564_pta-miR396:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 tacttttccacagctttcttgaact 48
|||||||||||||||||||||||||
Sbjct: 12 tacttttccacagctttcttgaact 36
>47009_ath-miR396b:pmrd
Length = 135
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 tacttttccacagctttcttgaact 48
|||||||||||||||||||||||||
Sbjct: 6 tacttttccacagctttcttgaact 30
>55083_zma-miR396l:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55081_zma-miR396j:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55080_zma-miR396i:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55079_zma-miR396h:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaactgcat 27
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 118 gttcaataaagctgtgggaa 137
||||||||||||||||||||
Sbjct: 95 gttcaataaagctgtgggaa 114
>55074_zma-miR396c:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaactgcat 27
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 118 gttcaataaagctgtgggaa 137
||||||||||||||||||||
Sbjct: 83 gttcaataaagctgtgggaa 102
>55073_zma-miR396b:pmrd
Length = 136
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 118 gttcaataaagctgtgggaa 137
||||||||||||||||||||
Sbjct: 99 gttcaataaagctgtgggaa 118
>55072_zma-miR396a:pmrd
Length = 137
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 118 gttcaataaagctgtgggaa 137
||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119
>54645_sof-miR396:pmrd
Length = 134
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 118 gttcaataaagctgtgggaa 137
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>54486_sbi-miR396b:pmrd
Length = 128
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 118 gttcaataaagctgtgggaa 137
||||||||||||||||||||
Sbjct: 91 gttcaataaagctgtgggaa 110
>54485_sbi-miR396a:pmrd
Length = 125
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 118 gttcaataaagctgtgggaa 137
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>48946_osa-miR396b:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcat 34
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 118 gttcaataaagctgtgggaa 137
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>48485_gcl-miR396a:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcat 78
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 111 ttttggggttcaataaagctgtggga 136
||||| ||||||||||||||||||||
Sbjct: 26 ttttgcggttcaataaagctgtggga 1
>46887_aqc-miR396a:pmrd
Length = 122
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 112 tttggggttcaataaagctgtgggaa 137
|||| |||||||||||||||||||||
Sbjct: 96 tttgcggttcaataaagctgtgggaa 121
>54869_vvi-miR396b:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 11 cttttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 11 cttttccacagctttcttgaact 33
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 137 cttttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 145 cttttccacagctttcttgaact 123
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 137 cttttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgca 51
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 118 gttcaataaagctgtgggaa 137
||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145
>48748_mtr-miR396a:pmrd
Length = 93
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 3 cttttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 18 cttttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cttttccacagctttcttgaact 48
|||||||||||||||||||||||
Sbjct: 18 cttttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgca 51
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117 ggttcaataaagctgtggga 136
||||||||||||||||||||
Sbjct: 96 ggttcaataaagctgtggga 115
>48507_ghr-miR396b:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgca 51
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117 ggttcaataaagctgtggga 136
||||||||||||||||||||
Sbjct: 96 ggttcaataaagctgtggga 115
>55082_zma-miR396k:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgc 50
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 27 ttttccacagctttcttgaact 48
||||||||||||||||||||||
Sbjct: 95 ttttccacagctttcttgaact 74
>51736_ptc-miR396c:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 ttttccacagctttcttgaact 48
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>48486_gcl-miR396b:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 111 ttttggggttcaataaagctgtggga 136
||||| ||||||||||||||||||||
Sbjct: 76 ttttgcggttcaataaagctgtggga 101
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactgcat 52
||||| ||||||||||||||||||
Sbjct: 1 ttccatagctttcttgaactgcat 24
>55078_zma-miR396g:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 tttccacagctttcttgaact 48
|||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 tttccacagctttcttgaact 48
|||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaact 22
>54870_vvi-miR396c:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaactg 49
|||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactg 31
>54487_sbi-miR396c:pmrd
Length = 162
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 tttccacagctttcttgaact 48
|||||||||||||||||||||
Sbjct: 20 tttccacagctttcttgaact 40
>48947_osa-miR396c:pmrd
Length = 141
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 tttccacagctttcttgaact 48
|||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaact 30
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ttccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
