miRNEST 2.0, an integrative microRNA resource :: BLAST
>47031_ath-miR408:pmrd
Length = 218
Score = 137 bits (69), Expect = 2e-33
Identities = 96/104 (92%), Gaps = 2/104 (1%)
Strand = Plus / Plus
Query: 4 agagagagacagggaacaagcagagcatggattgagtttttaccaaaacatcaaatgact 63
||||||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||
Sbjct: 45 agagagagacagggaacaagcagagcatggattgagttt--actaaaacattaaacgact 102
Query: 64 atgtttggtctcttcccatgcactgcctcttccctggctccctc 107
||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 103 ctgttttgtctctacccatgcactgcctcttccctggctccctc 146
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 131 bits (66), Expect = 1e-31
Identities = 93/101 (92%), Gaps = 2/101 (1%)
Strand = Plus / Minus
Query: 6 agagagacagggaacaagcagagcatggattgagtttttaccaaaacatcaaatgactat 65
||||||||||||||||||||||||||||||||||||| || ||||||| ||| |||| |
Sbjct: 99 agagagacagggaacaagcagagcatggattgagttt--actaaaacattaaacgactct 42
Query: 66 gtttggtctcttcccatgcactgcctcttccctggctccct 106
|||| |||||| |||||||||||||||||||||||||||||
Sbjct: 41 gttttgtctctacccatgcactgcctcttccctggctccct 1
>54892_vvi-miR408:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 73 ctcttcccatgcactgcctcttccctggctc 103
|||| ||||||||||||||||||||||||||
Sbjct: 69 ctctacccatgcactgcctcttccctggctc 99
>48428_cpt-miR408:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 77 tcccatgcactgcctcttccctggctc 103
|||||||||||||||||||||||||||
Sbjct: 66 tcccatgcactgcctcttccctggctc 92
>51762_ptc-miR408:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 73 ctcttcccatgcactgcctcttccctggct 102
|||| |||||||||||||||||||||||||
Sbjct: 68 ctctacccatgcactgcctcttccctggct 97
>46892_aqc-miR408:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 73 ctcttcccatgcactgcctcttccctggct 102
||||| ||||||||||||||||||||||||
Sbjct: 30 ctctttccatgcactgcctcttccctggct 1
>54648_sof-miR408c:pmrd
Length = 286
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 77 tcccatgcactgcctcttccctggctccc 105
|||| ||||||||||||||||||||||||
Sbjct: 243 tcccctgcactgcctcttccctggctccc 271
>54647_sof-miR408b:pmrd
Length = 286
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 77 tcccatgcactgcctcttccctggctccc 105
|||| ||||||||||||||||||||||||
Sbjct: 243 tcccctgcactgcctcttccctggctccc 271
>54646_sof-miR408a:pmrd
Length = 283
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 77 tcccatgcactgcctcttccctggctccc 105
|||| ||||||||||||||||||||||||
Sbjct: 240 tcccctgcactgcctcttccctggctccc 268
>48975_osa-miR408:pmrd
Length = 213
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 77 tcccatgcactgcctcttccctggctccc 105
|||| ||||||||||||||||||||||||
Sbjct: 149 tcccctgcactgcctcttccctggctccc 177
>55104_zma-miR408:pmrd
Length = 191
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 tcccatgcactgcctcttccctggctcc 104
|||| |||||||||||||||||||||||
Sbjct: 148 tcccctgcactgcctcttccctggctcc 175
>54690_tae-miR408:pmrd
Length = 187
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggctccc 105
||||||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggctccc 160
>54649_sof-miR408d:pmrd
Length = 215
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggctccc 105
||||||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggctccc 200
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 73 ctcttcccatgcactgcctcttccctg 99
|||| ||||||||||||||||||||||
Sbjct: 53 ctctacccatgcactgcctcttccctg 79
>51566_pta-miR408:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 81 atgcactgcctcttccctggctc 103
|||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggctc 86
>51397_ppt-miR408b:pmrd
Length = 144
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 80 catgcactgcctcttccctggct 102
|||||||||||||||||||||||
Sbjct: 92 catgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 80 catgcactgcctcttccctggct 102
|||||||||||||||||||||||
Sbjct: 74 catgcactgcctcttccctggct 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 10 agacagggaacaagcagagcatggattgagtt 41
|||||||||||| | ||||||||||| |||||
Sbjct: 8 agacagggaacaggtagagcatggatggagtt 39
>54585_smo-miR408:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 atgcactgcctcttccctggct 102
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>54499_sbi-miR408:pmrd
Length = 205
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 tcccatgcactgcctcttccctggct 102
|||| |||||||||||||||||||||
Sbjct: 180 tcccctgcactgcctcttccctggct 205
>54389_rco-miR408:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 73 ctcttcccatgcactgcctcttccctggct 102
|||| ||| |||||||||||||||||||||
Sbjct: 82 ctctacccctgcactgcctcttccctggct 111
>48317_bdi-miR408:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 ccatgcactgcctcttccctgg 100
||||||||||||||||||||||
Sbjct: 67 ccatgcactgcctcttccctgg 88
>54650_sof-miR408e:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 82 tgcactgcctcttccctggctccc 105
||||||| ||||||||||||||||
Sbjct: 245 tgcactgactcttccctggctccc 268
