miRNEST 2.0, an integrative microRNA resource :: BLAST
>48377_bna-miR399:pmrd
Length = 102
Score = 202 bits (102), Expect = 6e-53
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 26 acagggcaagatctctattggcagaaaaccattacttagatctttgcatctctttctgca 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acagggcaagatctctattggcagaaaaccattacttagatctttgcatctctttctgca 60
Query: 86 ttgatttgtagtgagttctctgccaaaggagatttgcccggt 127
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgatttgtagtgagttctctgccaaaggagatttgcccggt 102
>47015_ath-miR399a:pmrd
Length = 123
Score = 161 bits (81), Expect = 2e-40
Identities = 113/123 (91%), Gaps = 3/123 (2%)
Strand = Plus / Plus
Query: 17 aaatgcattacagggcaagatctctattggcagaaaaccattacttagatctttgcatct 76
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 aaatgcattacagggtaagatctctattggcaggaaaccattacttagatctttgcatct 60
Query: 77 ctttctgcattgattt---gtagtgagttctctgccaaaggagatttgcccggtaattct 133
|||| ||||||| ||| ||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 61 ctttatgcattgcttttaattagtgagttatctgccaaaggagatttgccctgtaattct 120
Query: 134 tct 136
|||
Sbjct: 121 tct 123
>47020_ath-miR399f:pmrd
Length = 118
Score = 71.9 bits (36), Expect = 1e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 90 tttgtagtgagttctctgccaaaggagatttgcccggtaattct 133
||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 72 tttgtggtgagctctctgccaaaggagatttgcccggtaattct 115
>54881_vvi-miR399e:pmrd
Length = 112
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 103 ctctgccaaaggagatttgcccggtaattcttct 136
|||||||||||||||||||||||| |||||||||
Sbjct: 79 ctctgccaaaggagatttgcccggcaattcttct 112
>51749_ptc-miR399c:pmrd
Length = 126
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 106 tgccaaaggagatttgcccggtaattcttc 135
||||||||||||||||||||| ||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattcttc 126
>51748_ptc-miR399b:pmrd
Length = 126
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 106 tgccaaaggagatttgcccggtaattcttc 135
||||||||||||||||||||| ||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattcttc 126
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 101 ttctctgccaaaggagatttgccc 124
||||||||||||||||||||||||
Sbjct: 61 ttctctgccaaaggagatttgccc 84
>47018_ath-miR399d:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 101 ttctctgccaaaggagatttgccc 124
||||||||||||||||||||||||
Sbjct: 65 ttctctgccaaaggagatttgccc 88
>48969_osa-miR399f:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 102 tctctgccaaaggagatttgccc 124
|||||||||||||||||||||||
Sbjct: 83 tctctgccaaaggagatttgccc 105
>54494_sbi-miR399f:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 103 ctctgccaaaggagatttgccc 124
||||||||||||||||||||||
Sbjct: 78 ctctgccaaaggagatttgccc 99
>51756_ptc-miR399j:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 20 tgcattacagggcaagatctctattggcag 49
||||||||||||||||| ||| ||||||||
Sbjct: 1 tgcattacagggcaagacctccattggcag 30
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 103 ctctgccaaaggagatttgcccggtaattcttct 136
||||||||||||||||||| |||| || ||||||
Sbjct: 79 ctctgccaaaggagatttgtccggcaaatcttct 112
>52630_ptc-miRf10808-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 106 tgccaaaggagatttgcccgg 126
|||||||||||||||||||||
Sbjct: 25 tgccaaaggagatttgcccgg 5
>51890_ptc-miRf10068-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 106 tgccaaaggagatttgcccgg 126
|||||||||||||||||||||
Sbjct: 25 tgccaaaggagatttgcccgg 5
>48970_osa-miR399g:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 104 tctgccaaaggagatttgccc 124
|||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgccc 107
>48754_mtr-miR399e:pmrd
Length = 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 104 tctgccaaaggagatttgccc 124
|||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgccc 113
>48750_mtr-miR399a:pmrd
Length = 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 104 tctgccaaaggagatttgccc 124
|||||||||||||||||||||
Sbjct: 93 tctgccaaaggagatttgccc 113
>47019_ath-miR399e:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 103 ctctgccaaaggagatttgcc 123
|||||||||||||||||||||
Sbjct: 76 ctctgccaaaggagatttgcc 96
>55096_zma-miR399f:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgcccggtaattcttctgcac 140
||||||||||| |||||||| | ||||| |||||||
Sbjct: 65 ctgccaaaggaaatttgccccggaattcatctgcac 100
>54883_vvi-miR399g:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgccc 124
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
>54493_sbi-miR399e:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgccc 124
||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgccc 105
>51747_ptc-miR399a:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgccc 124
||||||||||||||||||||
Sbjct: 90 ctgccaaaggagatttgccc 109
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgccc 124
||||||||||||||||||||
Sbjct: 84 ctgccaaaggagatttgccc 103
>48968_osa-miR399e:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 ctgccaaaggagatttgccc 124
||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgccc 106
