miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>48576_gma-miR393:pmrd
          Length = 120

 Score = 71.9 bits (36), Expect = 1e-13
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 15 aggaggcatccaaagggatcgcattgatcccaaatc 50
          ||||||||||||||||||||||||||||||||||||
Sbjct: 3  aggaggcatccaaagggatcgcattgatcccaaatc 38



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 91  ttgggatcatgctatctctttggatttctcctt 123
           |||||||||||||||| ||||||||||||||||
Sbjct: 87  ttgggatcatgctatccctttggatttctcctt 119




>54850_vvi-miR393b:pmrd
          Length = 83

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 15 aggaggcatccaaagggatcgcattgatcccaaa 48
          ||||||||||||||||||||||||||||||||||
Sbjct: 3  aggaggcatccaaagggatcgcattgatcccaaa 36



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 94  ggatcatgctatctctttggatttctcctt 123
           ||||||||||||| ||||||||| ||||||
Sbjct: 51  ggatcatgctatccctttggattcctcctt 80




>48731_mtr-miR393b:pmrd
          Length = 119

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 18 aggcatccaaagggatcgcattgatcccaaatct 51
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  aggcatccaaagggatcgcattgatcccaaatct 34



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 91  ttgggatcatgctatctctttggatt 116
           |||||||||||||||| |||||||||
Sbjct: 91  ttgggatcatgctatccctttggatt 116




>52949_ptc-miRf11127-akr:pmrd
          Length = 93

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 15 aggaggcatccaaagggatcgcattgatcccaa 47
          |||||||||||||||||||||||||||||||||
Sbjct: 6  aggaggcatccaaagggatcgcattgatcccaa 38



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 94  ggatcatgctatctctttggatttctcctt 123
           ||||||||||||| ||||||||| ||||||
Sbjct: 60  ggatcatgctatccctttggattcctcctt 89




>52948_ptc-miRf11126-akr:pmrd
          Length = 93

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 15 aggaggcatccaaagggatcgcattgatcccaa 47
          |||||||||||||||||||||||||||||||||
Sbjct: 6  aggaggcatccaaagggatcgcattgatcccaa 38



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 94  ggatcatgctatctctttggatttctcctt 123
           ||||||||||||| ||||||||| ||||||
Sbjct: 60  ggatcatgctatccctttggattcctcctt 89




>51950_ptc-miRf10128-akr:pmrd
          Length = 99

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 15 aggaggcatccaaagggatcgcattgatcccaa 47
          |||||||||||||||||||||||||||||||||
Sbjct: 9  aggaggcatccaaagggatcgcattgatcccaa 41



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 94  ggatcatgctatctctttggatttctcctt 123
           ||||||||||||| ||||||||| ||||||
Sbjct: 63  ggatcatgctatccctttggattcctcctt 92




>51720_ptc-miR393a:pmrd
          Length = 85

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 15 aggaggcatccaaagggatcgcattgatcccaa 47
          |||||||||||||||||||||||||||||||||
Sbjct: 3  aggaggcatccaaagggatcgcattgatcccaa 35



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 94  ggatcatgctatctctttggatttctcct 122
           ||||||||||||| ||||||||| |||||
Sbjct: 57  ggatcatgctatccctttggattcctcct 85




>53841_ptc-miRf12019-akr:pmrd
          Length = 98

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 15 aggaggcatccaaagggatcgcattgatccc 45
          |||||||||||||||||||||||||||||||
Sbjct: 9  aggaggcatccaaagggatcgcattgatccc 39



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 94  ggatcatgctatctctttggatttctcctt 123
           ||||||||||||| ||||||||| ||||||
Sbjct: 62  ggatcatgctatccctttggattcctcctt 91




>53840_ptc-miRf12018-akr:pmrd
          Length = 92

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 15 aggaggcatccaaagggatcgcattgatccc 45
          |||||||||||||||||||||||||||||||
Sbjct: 6  aggaggcatccaaagggatcgcattgatccc 36



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 94  ggatcatgctatctctttggatttctcctt 123
           ||||||||||||| ||||||||| ||||||
Sbjct: 59  ggatcatgctatccctttggattcctcctt 88




>52374_ptc-miRf10552-akr:pmrd
          Length = 92

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 15 aggaggcatccaaagggatcgcattgatccc 45
          |||||||||||||||||||||||||||||||
Sbjct: 6  aggaggcatccaaagggatcgcattgatccc 36



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 94  ggatcatgctatctctttggatttctcctt 123
           ||||||||||||| ||||||||| ||||||
Sbjct: 59  ggatcatgctatccctttggattcctcctt 88




>51972_ptc-miRf10150-akr:pmrd
          Length = 98

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                         
Query: 15 aggaggcatccaaagggatcgcattgatccc 45
          |||||||||||||||||||||||||||||||
Sbjct: 90 aggaggcatccaaagggatcgcattgatccc 60



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 94  ggatcatgctatctctttggatttctcctt 123
           ||||||||||||| ||||||||| ||||||
Sbjct: 37  ggatcatgctatccctttggattcctcctt 8




>51721_ptc-miR393b:pmrd
          Length = 84

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 15 aggaggcatccaaagggatcgcattgatccc 45
          |||||||||||||||||||||||||||||||
Sbjct: 3  aggaggcatccaaagggatcgcattgatccc 33



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 94  ggatcatgctatctctttggatttctcct 122
           ||||||||||||| ||||||||| |||||
Sbjct: 56  ggatcatgctatccctttggattcctcct 84




>48730_mtr-miR393:pmrd
          Length = 135

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 15 aggaggcatccaaagggatcgcattgatcc 44
          ||||||||||||||||||||||||||||||
Sbjct: 13 aggaggcatccaaagggatcgcattgatcc 42



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 91  ttgggatcatgctatctctttggatttctcctt 123
           |||||||||||| ||| ||||||||||||||||
Sbjct: 93  ttgggatcatgccatccctttggatttctcctt 125




>54470_sbi-miR393:pmrd
          Length = 139

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 15 aggaggcatccaaagggatcgcattgatcc 44
          |||| |||||||||||||||||||||||||
Sbjct: 13 aggaagcatccaaagggatcgcattgatcc 42




>48917_osa-miR393:pmrd
          Length = 115

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 gcatccaaagggatcgcattgatcc 44
          |||||||||||||||||||||||||
Sbjct: 8  gcatccaaagggatcgcattgatcc 32




>54849_vvi-miR393a:pmrd
          Length = 126

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 23 tccaaagggatcgcattgatccca 46
          ||||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatccca 34




>47287_ath-miRf10187-akr:pmrd
          Length = 162

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 atccaaagggatcgcattgatcc 44
          |||||||||||||||||||||||
Sbjct: 11 atccaaagggatcgcattgatcc 33




>47214_ath-miRf10114-akr:pmrd
          Length = 131

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 atccaaagggatcgcattgatcc 44
          |||||||||||||||||||||||
Sbjct: 9  atccaaagggatcgcattgatcc 31



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 94  ggatcatgctatctctttggatt 116
           |||||||||||||||||||||||
Sbjct: 102 ggatcatgctatctctttggatt 124




>46999_ath-miR393b:pmrd
          Length = 160

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 atccaaagggatcgcattgatcc 44
          |||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32




>46998_ath-miR393a:pmrd
          Length = 133

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 atccaaagggatcgcattgatcc 44
          |||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 94  ggatcatgctatctctttggatt 116
           |||||||||||||||||||||||
Sbjct: 103 ggatcatgctatctctttggatt 125




>55062_zma-miR393f:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 23 tccaaagggatcgcattgatcc 44
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>55057_zma-miR393a:pmrd
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 23 tccaaagggatcgcattgatcc 44
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>48373_bna-miR393:pmrd
          Length = 127

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 23 tccaaagggatcgcattgatcc 44
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>55063_zma-miR393g:pmrd
          Length = 87

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>55061_zma-miR393e:pmrd
          Length = 89

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 87 tccaaagggatcgcattgatc 67




>55060_zma-miR393d:pmrd
          Length = 91

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 89 tccaaagggatcgcattgatc 69




>55059_zma-miR393c:pmrd
          Length = 89

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 3  tccaaagggatcgcattgatc 23




>55058_zma-miR393b:pmrd
          Length = 91

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 3  tccaaagggatcgcattgatc 23




>55056_zma-miR393:pmrd
          Length = 126

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41




>51723_ptc-miR393d:pmrd
          Length = 107

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>51722_ptc-miR393c:pmrd
          Length = 107

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>48919_osa-miR393b:pmrd
          Length = 132

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47




>48918_osa-miR393b:pmrd
          Length = 132

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47




>48501_ghr-miR393:pmrd
          Length = 119

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 23 tccaaagggatcgcattgatc 43
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21