miRNEST 2.0, an integrative microRNA resource :: BLAST
>48576_gma-miR393:pmrd
Length = 120
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 14 aggaggcatccaaagggatcgcattgatcccaaatc 49
||||||||||||||||||||||||||||||||||||
Sbjct: 3 aggaggcatccaaagggatcgcattgatcccaaatc 38
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 90 ttgggatcatgctatctctttggatttctcctt 122
|||||||||||||||| ||||||||||||||||
Sbjct: 87 ttgggatcatgctatccctttggatttctcctt 119
>54850_vvi-miR393b:pmrd
Length = 83
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 14 aggaggcatccaaagggatcgcattgatcccaaa 47
||||||||||||||||||||||||||||||||||
Sbjct: 3 aggaggcatccaaagggatcgcattgatcccaaa 36
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 ggatcatgctatctctttggatttctcctt 122
||||||||||||| ||||||||| ||||||
Sbjct: 51 ggatcatgctatccctttggattcctcctt 80
>48731_mtr-miR393b:pmrd
Length = 119
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 17 aggcatccaaagggatcgcattgatcccaaatct 50
||||||||||||||||||||||||||||||||||
Sbjct: 1 aggcatccaaagggatcgcattgatcccaaatct 34
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 90 ttgggatcatgctatctctttggatt 115
|||||||||||||||| |||||||||
Sbjct: 91 ttgggatcatgctatccctttggatt 116
>52949_ptc-miRf11127-akr:pmrd
Length = 93
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 14 aggaggcatccaaagggatcgcattgatcccaa 46
|||||||||||||||||||||||||||||||||
Sbjct: 6 aggaggcatccaaagggatcgcattgatcccaa 38
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 ggatcatgctatctctttggatttctcctt 122
||||||||||||| ||||||||| ||||||
Sbjct: 60 ggatcatgctatccctttggattcctcctt 89
>52948_ptc-miRf11126-akr:pmrd
Length = 93
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 14 aggaggcatccaaagggatcgcattgatcccaa 46
|||||||||||||||||||||||||||||||||
Sbjct: 6 aggaggcatccaaagggatcgcattgatcccaa 38
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 ggatcatgctatctctttggatttctcctt 122
||||||||||||| ||||||||| ||||||
Sbjct: 60 ggatcatgctatccctttggattcctcctt 89
>51950_ptc-miRf10128-akr:pmrd
Length = 99
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 14 aggaggcatccaaagggatcgcattgatcccaa 46
|||||||||||||||||||||||||||||||||
Sbjct: 9 aggaggcatccaaagggatcgcattgatcccaa 41
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 ggatcatgctatctctttggatttctcctt 122
||||||||||||| ||||||||| ||||||
Sbjct: 63 ggatcatgctatccctttggattcctcctt 92
>51720_ptc-miR393a:pmrd
Length = 85
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 14 aggaggcatccaaagggatcgcattgatcccaa 46
|||||||||||||||||||||||||||||||||
Sbjct: 3 aggaggcatccaaagggatcgcattgatcccaa 35
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 93 ggatcatgctatctctttggatttctcct 121
||||||||||||| ||||||||| |||||
Sbjct: 57 ggatcatgctatccctttggattcctcct 85
>53841_ptc-miRf12019-akr:pmrd
Length = 98
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 14 aggaggcatccaaagggatcgcattgatccc 44
|||||||||||||||||||||||||||||||
Sbjct: 9 aggaggcatccaaagggatcgcattgatccc 39
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 ggatcatgctatctctttggatttctcctt 122
||||||||||||| ||||||||| ||||||
Sbjct: 62 ggatcatgctatccctttggattcctcctt 91
>53840_ptc-miRf12018-akr:pmrd
Length = 92
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 14 aggaggcatccaaagggatcgcattgatccc 44
|||||||||||||||||||||||||||||||
Sbjct: 6 aggaggcatccaaagggatcgcattgatccc 36
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 ggatcatgctatctctttggatttctcctt 122
||||||||||||| ||||||||| ||||||
Sbjct: 59 ggatcatgctatccctttggattcctcctt 88
>52374_ptc-miRf10552-akr:pmrd
Length = 92
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 14 aggaggcatccaaagggatcgcattgatccc 44
|||||||||||||||||||||||||||||||
Sbjct: 6 aggaggcatccaaagggatcgcattgatccc 36
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 ggatcatgctatctctttggatttctcctt 122
||||||||||||| ||||||||| ||||||
Sbjct: 59 ggatcatgctatccctttggattcctcctt 88
>51972_ptc-miRf10150-akr:pmrd
Length = 98
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 14 aggaggcatccaaagggatcgcattgatccc 44
|||||||||||||||||||||||||||||||
Sbjct: 90 aggaggcatccaaagggatcgcattgatccc 60
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 93 ggatcatgctatctctttggatttctcctt 122
||||||||||||| ||||||||| ||||||
Sbjct: 37 ggatcatgctatccctttggattcctcctt 8
>51721_ptc-miR393b:pmrd
Length = 84
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 14 aggaggcatccaaagggatcgcattgatccc 44
|||||||||||||||||||||||||||||||
Sbjct: 3 aggaggcatccaaagggatcgcattgatccc 33
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 93 ggatcatgctatctctttggatttctcct 121
||||||||||||| ||||||||| |||||
Sbjct: 56 ggatcatgctatccctttggattcctcct 84
>48730_mtr-miR393:pmrd
Length = 135
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 aggaggcatccaaagggatcgcattgatcc 43
||||||||||||||||||||||||||||||
Sbjct: 13 aggaggcatccaaagggatcgcattgatcc 42
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 90 ttgggatcatgctatctctttggatttctcctt 122
|||||||||||| ||| ||||||||||||||||
Sbjct: 93 ttgggatcatgccatccctttggatttctcctt 125
>54470_sbi-miR393:pmrd
Length = 139
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 14 aggaggcatccaaagggatcgcattgatcc 43
|||| |||||||||||||||||||||||||
Sbjct: 13 aggaagcatccaaagggatcgcattgatcc 42
>48917_osa-miR393:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 gcatccaaagggatcgcattgatcc 43
|||||||||||||||||||||||||
Sbjct: 8 gcatccaaagggatcgcattgatcc 32
>54849_vvi-miR393a:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatccca 45
||||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatccca 34
>47287_ath-miRf10187-akr:pmrd
Length = 162
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 atccaaagggatcgcattgatcc 43
|||||||||||||||||||||||
Sbjct: 11 atccaaagggatcgcattgatcc 33
>47214_ath-miRf10114-akr:pmrd
Length = 131
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 atccaaagggatcgcattgatcc 43
|||||||||||||||||||||||
Sbjct: 9 atccaaagggatcgcattgatcc 31
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 ggatcatgctatctctttggatt 115
|||||||||||||||||||||||
Sbjct: 102 ggatcatgctatctctttggatt 124
>46999_ath-miR393b:pmrd
Length = 160
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 atccaaagggatcgcattgatcc 43
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
>46998_ath-miR393a:pmrd
Length = 133
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 atccaaagggatcgcattgatcc 43
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 ggatcatgctatctctttggatt 115
|||||||||||||||||||||||
Sbjct: 103 ggatcatgctatctctttggatt 125
>55062_zma-miR393f:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatcc 43
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>55057_zma-miR393a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatcc 43
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>48373_bna-miR393:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatcc 43
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>55063_zma-miR393g:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>55061_zma-miR393e:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 87 tccaaagggatcgcattgatc 67
>55060_zma-miR393d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 89 tccaaagggatcgcattgatc 69
>55059_zma-miR393c:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatc 23
>55058_zma-miR393b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 3 tccaaagggatcgcattgatc 23
>55056_zma-miR393:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>51723_ptc-miR393d:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>51722_ptc-miR393c:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>48919_osa-miR393b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>48918_osa-miR393b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>48501_ghr-miR393:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tccaaagggatcgcattgatc 42
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
