miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46917_ath-miR156h:pmrd
Length = 106
Score = 163 bits (82), Expect = 3e-41
Identities = 94/98 (95%)
Strand = Plus / Plus
Query: 6 aaaatgttgacagaagaaagagagcacaagccgggattagcaaaaagagagttttgccct 65
||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||
Sbjct: 5 aaaatgttgacagaagaaagagagcacaacctgggattagcaaaaagatagttttgccct 64
Query: 66 tgtcgggagtgtgctctctttacttctgccaccatcat 103
||||||||||||||||||||| ||||||||||||||||
Sbjct: 65 tgtcgggagtgtgctctctttccttctgccaccatcat 102
>48529_gma-miR156b:pmrd
Length = 120
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 atgttgacagaagaaagagagcacaagccggga 41
|||||||||||||| ||||||||||| ||||||
Sbjct: 17 atgttgacagaagagagagagcacaacccggga 49
>46857_ahy-miR157k:pmrd
Length = 139
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 aaatgttgacagaagaaagagagcacaa 34
|||||||||||||||| |||||||||||
Sbjct: 16 aaatgttgacagaagagagagagcacaa 43
>54571_smo-miR156c:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ttgacagaagaaagagagcaca 33
||||||||||||||||||||||
Sbjct: 11 ttgacagaagaaagagagcaca 32
>46903_aqc-miR529:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 atgttgacagaagaaagagagcacaa 34
|||||||||||||| |||||||||||
Sbjct: 14 atgttgacagaagagagagagcacaa 39
>54771_vvi-miR156f:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcacaa 34
||||||||||||| |||||||||||
Sbjct: 9 tgttgacagaagatagagagcacaa 33
>48530_gma-miR156c:pmrd
Length = 185
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcacaa 34
||||||||||||| |||||||||||
Sbjct: 144 tgttgacagaagatagagagcacaa 168
>54774_vvi-miR156i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcaca 33
||||||||||||| ||||||||||
Sbjct: 9 tgttgacagaagatagagagcaca 32
>54772_vvi-miR156g:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcaca 33
||||||||||||| ||||||||||
Sbjct: 9 tgttgacagaagatagagagcaca 32
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcaca 33
||||||||||||| ||||||||||
Sbjct: 1 tgttgacagaagatagagagcaca 24
>51600_ptc-miR156j:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcaca 33
||||||||||||| ||||||||||
Sbjct: 9 tgttgacagaagatagagagcaca 32
>51599_ptc-miR156i:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcaca 33
||||||||||||| ||||||||||
Sbjct: 9 tgttgacagaagatagagagcaca 32
>51597_ptc-miR156g:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcaca 33
||||||||||||| ||||||||||
Sbjct: 9 tgttgacagaagatagagagcaca 32
>48697_mtr-miR156h:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcaca 33
||||||||||||| ||||||||||
Sbjct: 4 tgttgacagaagatagagagcaca 27
>48696_mtr-miR156f:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcaca 33
||||||||||||| ||||||||||
Sbjct: 4 tgttgacagaagatagagagcaca 27
>48695_mtr-miR156e:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcaca 33
||||||||||||| ||||||||||
Sbjct: 4 tgttgacagaagatagagagcaca 27
>48631_gra-miR157b:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcaca 33
||||||||||||| ||||||||||
Sbjct: 3 tgttgacagaagatagagagcaca 26
>48630_gra-miR157a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcaca 33
||||||||||||| ||||||||||
Sbjct: 3 tgttgacagaagatagagagcaca 26
>48531_gma-miR156d:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcaca 33
||||||||||||| ||||||||||
Sbjct: 19 tgttgacagaagatagagagcaca 42
>46925_ath-miR157b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcaca 33
||||||||||||| ||||||||||
Sbjct: 17 tgttgacagaagatagagagcaca 40
>46924_ath-miR157a:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tgttgacagaagaaagagagcaca 33
||||||||||||| ||||||||||
Sbjct: 2 tgttgacagaagatagagagcaca 25
