miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48322_bdi-miR1135:pmrd
Length = 138
Score = 127 bits (64), Expect = 3e-30
Identities = 101/112 (90%), Gaps = 1/112 (0%)
Strand = Plus / Minus
Query: 22 actcactccagtcggaattacttgttgaaatattacgtgtatctagacggttttttacac 81
|||| |||| ||||||||||||||| |||||||||| ||||||||||| ||||||||
Sbjct: 130 actccctccggtcggaattacttgtcgaaatattacatgtatctagac-acgttttacac 72
Query: 82 atagatacgtccgtatttgggcaaatttgagacaagtaattccgatcggagg 133
|||||||| ||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 71 atagatacatccgtatttgggcaaatttgagacaagtaataccggtcggagg 20
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 112 gacaagtaattccgatcggagggag 136
||||||||||||||| |||||||||
Sbjct: 105 gacaagtaattccgaccggagggag 129
>48320_bdi-miR1122:pmrd
Length = 180
Score = 89.7 bits (45), Expect = 6e-19
Identities = 70/76 (92%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 48 gaaatattac--gtgtatctagacggttttttacacatagatacgtccgtatttgggcaa 105
|||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct: 28 gaaatattacatgtgtatctagacg-ttttttacacatagatacatccgtatttggacaa 86
Query: 106 atttgagacaagtaat 121
||||||||| ||||||
Sbjct: 87 atttgagacgagtaat 102
>54702_tae-miR1127:pmrd
Length = 150
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 107 tttgagacaagtaattccgatcggagggag 136
|||| ||||||||||||||| |||||||||
Sbjct: 103 tttgtgacaagtaattccgaacggagggag 132
>54710_tae-miR1135:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 112 gacaagtaattccgatcggagggag 136
||||||||||||||| |||||||||
Sbjct: 82 gacaagtaattccgaacggagggag 106
