miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48314_bdi-miR172d:pmrd
Length = 93
Score = 95.6 bits (48), Expect = 3e-21
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 1 ggcagctgtcgtggtggcagttttggagaatcctgatgatgctgcagc 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 ggcagctgtcgtggtggcagttttggagaatcctgatgatgctgcagc 93
>48666_hvv-miR172c:pmrd
Length = 137
Score = 75.8 bits (38), Expect = 3e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 20 gttttggagaatcctgatgatgctgcagcggacgatga 57
||||||||||||||||||||||||||||||||||||||
Sbjct: 94 gttttggagaatcctgatgatgctgcagcggacgatga 131
>54683_tae-miR172a:pmrd
Length = 100
Score = 56.0 bits (28), Expect = 2e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 27 agaatcctgatgatgctgcagcggacga 54
||||||||||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcagcggacga 28
>48667_hvv-miR172d:pmrd
Length = 272
Score = 56.0 bits (28), Expect = 2e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 20 gttttggagaatcctgatgatgctgcag 47
||||||||||||||||||||||||||||
Sbjct: 245 gttttggagaatcctgatgatgctgcag 272
>48665_hvv-miR172b:pmrd
Length = 90
Score = 56.0 bits (28), Expect = 2e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 20 gttttggagaatcctgatgatgctgcag 47
||||||||||||||||||||||||||||
Sbjct: 63 gttttggagaatcctgatgatgctgcag 90
>48664_hvv-miR172a:pmrd
Length = 255
Score = 56.0 bits (28), Expect = 2e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 20 gttttggagaatcctgatgatgctgcag 47
||||||||||||||||||||||||||||
Sbjct: 228 gttttggagaatcctgatgatgctgcag 255
>48911_osa-miR172n:pmrd
Length = 62
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 22 tttggagaatcctgatgatgctgcag 47
||||||||||||||||||||||||||
Sbjct: 37 tttggagaatcctgatgatgctgcag 62
>48910_osa-miR172m:pmrd
Length = 297
Score = 52.0 bits (26), Expect = 4e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 22 tttggagaatcctgatgatgctgcag 47
||||||||||||||||||||||||||
Sbjct: 272 tttggagaatcctgatgatgctgcag 297
>55047_zma-miR172n:pmrd
Length = 81
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 14 gtggcagttttggagaatcctgatgatgctgca 46
||||| || ||||||||||||||||||||||||
Sbjct: 48 gtggcggtgttggagaatcctgatgatgctgca 80
>54684_tae-miR172b:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 27 agaatcctgatgatgctgcagcgga 51
|||||||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcagcgga 25
>48912_osa-miR172o:pmrd
Length = 53
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 27 agaatcctgatgatgctgcagcgga 51
|||||||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcagcgga 25
>54641_sof-miR172a:pmrd
Length = 300
Score = 44.1 bits (22), Expect = 9e-06
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 gagaatcctgatgatgctgcag 47
||||||||||||||||||||||
Sbjct: 279 gagaatcctgatgatgctgcag 300
>48913_osa-miR172p:pmrd
Length = 318
Score = 44.1 bits (22), Expect = 9e-06
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 gagaatcctgatgatgctgcag 47
||||||||||||||||||||||
Sbjct: 297 gagaatcctgatgatgctgcag 318
>46989_ath-miR172m:pmrd
Length = 141
Score = 44.1 bits (22), Expect = 9e-06
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 agaatcctgatgatgctgcagc 48
||||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcagc 22
>55046_zma-miR172m:pmrd
Length = 455
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 agaatcctgatgatgctgcag 47
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
>54755_tca-miR172:pmrd
Length = 240
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 agaatcctgatgatgctgcag 47
|||||||||||||||||||||
Sbjct: 1 agaatcctgatgatgctgcag 21
>51706_ptc-miR172i:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 26 gagaatcctgatgatgctgca 46
|||||||||||||||||||||
Sbjct: 96 gagaatcctgatgatgctgca 116
>51549_psi-miR172:pmrd
Length = 68
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 26 gagaatcctgatgatgctgca 46
|||||||||||||||||||||
Sbjct: 47 gagaatcctgatgatgctgca 67
>51337_pga-miR172:pmrd
Length = 248
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 26 gagaatcctgatgatgctgca 46
|||||||||||||||||||||
Sbjct: 227 gagaatcctgatgatgctgca 247
>46987_ath-miR172d:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 4e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 26 gagaatcctgatgatgctgcagcgg 50
||||||| |||||||||||||||||
Sbjct: 87 gagaatcttgatgatgctgcagcgg 111
>54839_vvi-miR172c:pmrd
Length = 138
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 28 gaatcctgatgatgctgcagcgg 50
||||| |||||||||||||||||
Sbjct: 109 gaatcttgatgatgctgcagcgg 131
>53842_ptc-miRf12020-akr:pmrd
Length = 136
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 28 gaatcctgatgatgctgcagcgg 50
||||| |||||||||||||||||
Sbjct: 111 gaatcttgatgatgctgcagcgg 133
>52375_ptc-miRf10553-akr:pmrd
Length = 136
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 28 gaatcctgatgatgctgcagcgg 50
||||| |||||||||||||||||
Sbjct: 111 gaatcttgatgatgctgcagcgg 133
>51948_ptc-miRf10126-akr:pmrd
Length = 152
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 28 gaatcctgatgatgctgcagcgg 50
||||| |||||||||||||||||
Sbjct: 119 gaatcttgatgatgctgcagcgg 141
>51705_ptc-miR172h:pmrd
Length = 143
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 28 gaatcctgatgatgctgcagcgg 50
||||| |||||||||||||||||
Sbjct: 115 gaatcttgatgatgctgcagcgg 137
>51704_ptc-miR172g:pmrd
Length = 143
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 28 gaatcctgatgatgctgcagcgg 50
||||| |||||||||||||||||
Sbjct: 115 gaatcttgatgatgctgcagcgg 137
>48151_ath-miRf11051-akr:pmrd
Length = 133
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 26 gagaatcctgatgatgctgcagc 48
||||||| |||||||||||||||
Sbjct: 97 gagaatcttgatgatgctgcagc 119
>47855_ath-miRf10755-akr:pmrd
Length = 133
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 26 gagaatcctgatgatgctgcagc 48
||||||| |||||||||||||||
Sbjct: 37 gagaatcttgatgatgctgcagc 15
>47545_ath-miRf10445-akr:pmrd
Length = 131
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 26 gagaatcctgatgatgctgcagc 48
||||||| |||||||||||||||
Sbjct: 96 gagaatcttgatgatgctgcagc 118
>46986_ath-miR172c:pmrd
Length = 133
Score = 38.2 bits (19), Expect = 6e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 26 gagaatcctgatgatgctgcagc 48
||||||| |||||||||||||||
Sbjct: 97 gagaatcttgatgatgctgcagc 119
