miRNEST 2.0, an integrative microRNA resource :: BLAST
>54691_tae-miR444:pmrd
Length = 426
Score = 182 bits (92), Expect = 6e-47
Identities = 157/179 (87%), Gaps = 6/179 (3%)
Strand = Plus / Plus
Query: 6 gcatgcggcggcaccaagcatgaggcgacaactgcattacttgctgggaagacgcaagta 65
||||| ||||||||| |||||||||| ||||||||||||||||| |||||| ||||||||
Sbjct: 13 gcatgtggcggcaccgagcatgaggcaacaactgcattacttgcggggaaggcgcaagta 72
Query: 66 tgacagcgagacatgcattacttgcgggaaaggcgcaaaacgaatagaagatcatcatac 125
|||| | |||||||||||| ||||||||||| |||||||||||| |||||
Sbjct: 73 ggacacc------tgcattacttgcaaacaaggcgcaaaattaatagaagatcaccatac 126
Query: 126 ttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctttgcca 184
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ttgtggctttcttgcaagtcatgcagttgctgcctcaagcttgctgcctccctttgcca 185
>54743_tae-miR2024b:pmrd
Length = 142
Score = 95.6 bits (48), Expect = 1e-20
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 121 catacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcctcc 176
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 87 catacttgtggctttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcc 142
Score = 77.8 bits (39), Expect = 3e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 12 ggcggcaccaagcatgaggcgacaactgcattacttgctgggaagacgcaagtatgaca 70
||||||||| |||||||||| ||||||||||||||||| |||||| |||||||| ||||
Sbjct: 1 ggcggcaccgagcatgaggcaacaactgcattacttgcggggaaggcgcaagtaggaca 59
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tgcattacttgcgggaaaggcgcaa 103
||||||||||||||| |||||||||
Sbjct: 27 tgcattacttgcggggaaggcgcaa 51
>54376_pvi-miR444:pmrd
Length = 127
Score = 85.7 bits (43), Expect = 1e-17
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 133 tttcttgcaagttgtgcagttgctgcctcaagcttgctgcctccctttgcc 183
|||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 77 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 127
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 133 tttcttgcaagttgtgcagttgctgcctcaagcttg 168
||||||||||| | ||||||||||||||| ||||||
Sbjct: 50 tttcttgcaagatatgcagttgctgcctctagcttg 15
>49007_osa-miR444f:pmrd
Length = 154
Score = 81.8 bits (41), Expect = 2e-16
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 132 ctttcttgcaagttgtgcagttgctgcctcaagcttgctgcctcc 176
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 109 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 153
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 15 ggcaccaagcatgaggcgacaactgcattacttgc 49
|||||||||||||||| |||||||||||||||||
Sbjct: 6 ggcaccaagcatgaggttacaactgcattacttgc 40
>48798_oru-miR444:pmrd
Length = 165
Score = 81.8 bits (41), Expect = 2e-16
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 132 ctttcttgcaagttgtgcagttgctgcctcaagcttgctgcctcc 176
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 15 ggcaccaagcatgaggcgacaactgcattacttgc 49
|||||||||||||||| |||||||||||||||||
Sbjct: 11 ggcaccaagcatgaggttacaactgcattacttgc 45
>54742_tae-miR2024a:pmrd
Length = 118
Score = 71.9 bits (36), Expect = 2e-13
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 117 tcatcatacttgtggctttcttgcaagttgtgcagttgctgcctcaagcttgctgcctcc 176
|||||||| | ||| |||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct: 59 tcatcataatcgtgactttctcgcaagttgtgcagttgctgtctcaagcttgctgactcc 118
Score = 69.9 bits (35), Expect = 6e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 15 ggcaccaagcatgaggcgacaactgcattacttgc 49
|||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcaccaagcatgaggcgacaactgcattacttgc 35
>55114_zma-miR444a:pmrd
Length = 138
Score = 65.9 bits (33), Expect = 1e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 152 ttgctgcctcaagcttgctgcctccctttgcca 184
|||||||||||||||||||||||||||||||||
Sbjct: 1 ttgctgcctcaagcttgctgcctccctttgcca 33
>55115_zma-miR444b:pmrd
Length = 174
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 152 ttgctgcctcaagcttgctgcctccctttgcca 184
|||||||||||||||| ||||||||||||||||
Sbjct: 1 ttgctgcctcaagcttcctgcctccctttgcca 33
>49006_osa-miR444e:pmrd
Length = 140
Score = 56.0 bits (28), Expect = 1e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 139 gcaagttgtgcagttgctgcctcaagcttgctgcct 174
||||||| ||||||||||||||||||||| ||||||
Sbjct: 91 gcaagttatgcagttgctgcctcaagcttactgcct 126
>48319_bdi-miR444:pmrd
Length = 110
Score = 56.0 bits (28), Expect = 1e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 141 aagttgtgcagttgctgcctcaagcttgctgc 172
||||| ||||||||||||||||||||||||||
Sbjct: 79 aagttatgcagttgctgcctcaagcttgctgc 110
