miRNEST 2.0, an integrative microRNA resource :: BLAST
>48579_gma-miR396b:pmrd
Length = 126
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 aagtcctggtcatgcttttccacagctttcttgaacttc 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aagtcctggtcatgcttttccacagctttcttgaacttc 42
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 108 agctcaagaaagctgtgggagaacatggca 137
||||||||||||||||||||||| ||||||
Sbjct: 88 agctcaagaaagctgtgggagaatatggca 117
>51738_ptc-miR396e:pmrd
Length = 145
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 98 gcgccatgggagctcaagaaagctgtgggagaacatgg 135
||||||||| ||||||||||||||||||||||||||||
Sbjct: 108 gcgccatggaagctcaagaaagctgtgggagaacatgg 145
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 8 ggtcatgcttttccacagctttcttgaacttc 39
||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcatgcttttccacagctttcttgaacttc 32
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 65.9 bits (33), Expect = 8e-12
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 98 gcgccatgggagctcaagaaagctgtgggagaacatg 134
||||||||| |||||||||||||||||||||||||||
Sbjct: 37 gcgccatggaagctcaagaaagctgtgggagaacatg 1
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 11 catgcttttccacagctttcttgaacttc 39
|||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttc 113
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 65.9 bits (33), Expect = 8e-12
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 98 gcgccatgggagctcaagaaagctgtgggagaacatg 134
||||||||| |||||||||||||||||||||||||||
Sbjct: 37 gcgccatggaagctcaagaaagctgtgggagaacatg 1
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 11 catgcttttccacagctttcttgaacttc 39
|||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttc 113
>51737_ptc-miR396d:pmrd
Length = 154
Score = 65.9 bits (33), Expect = 8e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 8 ggtcatgcttttccacagctttcttgaacttcc 40
|||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcatgcttttccacagctttcttgaacttcc 33
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 101 ccatgggagctcaagaaagctgtgggagaacatgg 135
|||||| ||||||||||||| ||||||||||||||
Sbjct: 120 ccatggaagctcaagaaagccgtgggagaacatgg 154
>54869_vvi-miR396b:pmrd
Length = 108
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 11 catgcttttccacagctttcttgaacttc 39
|||||||||||||||||||||||||||||
Sbjct: 7 catgcttttccacagctttcttgaacttc 35
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 11 catgcttttccacagctttcttgaacttc 39
|||| ||| ||||||||||||||||||||
Sbjct: 104 catggtttcccacagctttcttgaacttc 76
>54868_vvi-miR396a:pmrd
Length = 116
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 9 gtcatgcttttccacagctttcttgaact 37
|||||||||||||||||||||||||||||
Sbjct: 5 gtcatgcttttccacagctttcttgaact 33
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 108 agctcaagaaagctgtgggagaacatggca 137
||||||||||||||||||||| ||||||||
Sbjct: 86 agctcaagaaagctgtgggaggacatggca 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 12 atgcttttccacagctttcttgaacttcc 40
|||||||||||||||||||||||||||||
Sbjct: 148 atgcttttccacagctttcttgaacttcc 120
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 101 ccatgggagctcaagaaagctgtgggagaacat 133
|||||| ||||||||||||| ||||||||||||
Sbjct: 33 ccatggaagctcaagaaagccgtgggagaacat 1
>48580_gma-miR396c:pmrd
Length = 117
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 atgcttttccacagctttcttgaacttc 39
||||||||||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaacttc 42
>48748_mtr-miR396a:pmrd
Length = 93
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tgcttttccacagctttcttgaacttc 39
|||||||||||||||||||||||||||
Sbjct: 1 tgcttttccacagctttcttgaacttc 27
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 108 agctcaagaaagctgtgggagaa 130
|||||||||||||||||||||||
Sbjct: 69 agctcaagaaagctgtgggagaa 91
>47009_ath-miR396b:pmrd
Length = 135
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 8 ggtcatgcttttccacagctttcttgaactt 38
|||||| ||||||||||||||||||||||||
Sbjct: 1 ggtcatacttttccacagctttcttgaactt 31
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 108 agctcaagaaagctgtgggagaacatg 134
|||||||||||||||||||| ||||||
Sbjct: 106 agctcaagaaagctgtgggaaaacatg 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 9 gtcatgcttttccacagctttcttgaacttcca 41
|||||| ||| ||||||||||||||| ||||||
Sbjct: 134 gtcatgttttcccacagctttcttgagcttcca 102
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 11 catgcttttccacagctttcttgaacttcc 40
|||| |||||||||||||||||||||||||
Sbjct: 100 catgtttttccacagctttcttgaacttcc 71
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 gtcatgcttttccacagctttcttgaacttc 39
|||||||| |||||| |||||||||||||||
Sbjct: 1 gtcatgctattccacggctttcttgaacttc 31
>51736_ptc-miR396c:pmrd
Length = 102
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 catgcttttccacagctttcttgaacttcc 40
|||| |||||||||||||||||||||||||
Sbjct: 4 catgtttttccacagctttcttgaacttcc 33
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 10 tcatgcttttccacagctttcttgaacttc 39
||||||| |||||| |||||||||||||||
Sbjct: 102 tcatgctattccacggctttcttgaacttc 73
>51564_pta-miR396:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 9 gtcatgcttttccacagctttcttgaactt 38
||||| ||||||||||||||||||||||||
Sbjct: 8 gtcatacttttccacagctttcttgaactt 37
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 11 catgcttttccacagctttcttgaactt 38
|||||||| |||||| ||||||||||||
Sbjct: 110 catgctttcccacagttttcttgaactt 83
>54487_sbi-miR396c:pmrd
Length = 162
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 catgcttttccacagctttcttgaacttc 39
||||| |||||||||||||||||||||||
Sbjct: 14 catgcctttccacagctttcttgaacttc 42
>48947_osa-miR396c:pmrd
Length = 141
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 catgcttttccacagctttcttgaacttc 39
||||| |||||||||||||||||||||||
Sbjct: 4 catgcctttccacagctttcttgaacttc 32
>52339_ptc-miRf10517-akr:pmrd
Length = 164
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 catgcttttccacagctttcttgaactt 38
||||||||||||| ||||||||||||||
Sbjct: 1 catgcttttccacggctttcttgaactt 28
>51740_ptc-miR396g:pmrd
Length = 168
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 catgcttttccacagctttcttgaactt 38
||||||||||||| ||||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaactt 31
>55078_zma-miR396g:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tttccacagctttcttgaacttc 39
|||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaacttc 24
>55077_zma-miR396f:pmrd
Length = 166
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tttccacagctttcttgaacttc 39
|||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaacttc 24
>54584_smo-miR396:pmrd
Length = 168
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 tcatgcttttccacagctttcttgaac 36
|||||||||||||| ||||||||||||
Sbjct: 3 tcatgcttttccacggctttcttgaac 29
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 20 ccacagctttcttgaacttc 39
||||||||||||||||||||
Sbjct: 153 ccacagctttcttgaacttc 134
>48374_bna-miR396a:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaactt 38
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>46888_aqc-miR396b:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaactt 38
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55079_zma-miR396h:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54486_sbi-miR396b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaact 28
>51735_ptc-miR396b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>48578_gma-miR396a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ttccacagctttcttgaact 37
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20