miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>51868_ptc-miRf10046-akr:pmrd
          Length = 97

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 95  ccggccggtttgaaccggttt 115
           |||||||||||||||||||||
Sbjct: 71  ccggccggtttgaaccggttt 91

>52373_ptc-miRf10551-akr:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 99  ccggtttgaaccggttttta 118
           ||||||||||||||||||||
Sbjct: 96  ccggtttgaaccggttttta 77

>52274_ptc-miRf10452-akr:pmrd
          Length = 147

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 93  aaccggccggtttgaaccggtttt 116
           |||| |||||||||||||||||||
Sbjct: 104 aaccagccggtttgaaccggtttt 127