miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47115_ath-miRf10015-akr:pmrd
Length = 98
Score = 153 bits (77), Expect = 3e-38
Identities = 89/93 (95%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6 cgagtgttaagctggagtcttcttttcttccttgtgctcgagtgtctggttgagtgcgga 65
Query: 70 atggagaaaactctgaagctggcaatcgagtat 102
|||||||| ||||||||||||||| ||||||||
Sbjct: 66 atggagaagactctgaagctggcagtcgagtat 98
>47615_ath-miRf10515-akr:pmrd
Length = 90
Score = 145 bits (73), Expect = 7e-36
Identities = 85/89 (95%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2 cgagtgattagctggagtcttcttttcttccttgtgcttgagtgtctggttgagtgcgga 61
Query: 70 atggagaaaactctgaagctggcaatcga 98
|||||||| ||||||||||||||||||||
Sbjct: 62 atggagaagactctgaagctggcaatcga 90
>47187_ath-miRf10087-akr:pmrd
Length = 96
Score = 143 bits (72), Expect = 3e-35
Identities = 87/92 (94%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
|||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||
Sbjct: 5 cgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgcgga 64
Query: 70 atggagaaaactctgaagctggcaatcgagta 101
|||||||| ||||||||||||||| |||||||
Sbjct: 65 atggagaagactctgaagctggcagtcgagta 96
>47645_ath-miRf10545-akr:pmrd
Length = 94
Score = 141 bits (71), Expect = 1e-34
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
|||||||| || ||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 4 cgagtgattagttggagtcttcttttcttccttgtgctcgagtgtctggttgagtgcgaa 63
Query: 70 atggagaaaactctgaagctggcaatcgagt 100
|||||||| ||||||||||||||||||||||
Sbjct: 64 atggagaagactctgaagctggcaatcgagt 94
>48180_ath-miRf11080-akr:pmrd
Length = 235
Score = 135 bits (68), Expect = 7e-33
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 202 cgagtgaatagctggagtcttcttttcttccttgtgcttgagtgtctggttgagtgcgga 143
Query: 70 atggagaaaactctgaagctggcaatcgagtatgta 105
|||||||| ||||||||||| || ||||||||||||
Sbjct: 142 atggagaagactctgaagctcgccatcgagtatgta 107
>47725_ath-miRf10625-akr:pmrd
Length = 92
Score = 111 bits (56), Expect = 1e-25
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 22 tggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcggaatggagaaaact 81
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||
Sbjct: 18 tggagtcttcttttcttccttgtgctcgagtgtctagttgagtgcggaatggagaagact 77
Query: 82 ctgaagct 89
||||||||
Sbjct: 78 ctgaagct 85
>47125_ath-miRf10025-akr:pmrd
Length = 94
Score = 111 bits (56), Expect = 1e-25
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 4 cgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtctagttgagtgcgga 63
Query: 70 atggagaaaactctgaagct 89
||| |||| |||||||||||
Sbjct: 64 atgaagaagactctgaagct 83
>47525_ath-miRf10425-akr:pmrd
Length = 98
Score = 103 bits (52), Expect = 3e-23
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
|||||||| ||||||||||||||| |||||||| ||||| ||||||| ||||||||| ||
Sbjct: 6 cgagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgcaga 65
Query: 70 atggagaaaactctgaagctggcaatcgagta 101
| ||||| ||||||||||||||| |||||||
Sbjct: 66 tttgagaagactctgaagctggcagtcgagta 97
>47247_ath-miRf10147-akr:pmrd
Length = 94
Score = 103 bits (52), Expect = 3e-23
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 4 cgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgcgga 63
Query: 70 atggagaaaactctgaagct 89
||| |||| ||||||||||
Sbjct: 64 atgaagaaggctctgaagct 83
>47888_ath-miRf10788-akr:pmrd
Length = 194
Score = 101 bits (51), Expect = 1e-22
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 21 ctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcggaatggagaaaac 80
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |
Sbjct: 147 ctggagtcttcttttcttccttgtgctcgagtgtctggttaagtgcggaatgaagaaggc 88
Query: 81 tctgaagctggcaatcgagtatg 103
||||||||| | ||||||||||
Sbjct: 87 tctgaagcttgtgatcgagtatg 65
>47304_ath-miRf10204-akr:pmrd
Length = 132
Score = 99.6 bits (50), Expect = 4e-22
Identities = 83/94 (88%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 24 cgagtgaatagctggagtcttcttatcttccttgtgctcgtgtgtctggttgagtgcgga 83
Query: 70 atggagaaaactctgaagctggcaatcgagtatg 103
||| |||| |||||||||| | ||||||||||
Sbjct: 84 atgaagaaggctctgaagcttgtcatcgagtatg 117
>47494_ath-miRf10394-akr:pmrd
Length = 96
Score = 95.6 bits (48), Expect = 6e-21
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
|||||| |||||||||||||||||||||||||| ||||| ||||||| ||||| ||| ||
Sbjct: 5 cgagtggtaagctggagtcttcttttcttccttttgctcgagtgtctagttgaatgcaga 64
Query: 70 atggagaaaactctgaagctggcaatcgagta 101
|| |||| |||| |||||||||| |||||||
Sbjct: 65 atatagaagactccgaagctggcagtcgagta 96
>47369_ath-miRf10269-akr:pmrd
Length = 91
Score = 87.7 bits (44), Expect = 1e-18
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 21 ctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgg 68
|||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 44 ctggagtcttcttttcttccttgtgctcgagtgtctggttgagtgcgg 91
>47186_ath-miRf10086-akr:pmrd
Length = 85
Score = 87.7 bits (44), Expect = 1e-18
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtg 65
|||||||||||||||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 30 cgagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 85
>47246_ath-miRf10146-akr:pmrd
Length = 91
Score = 85.7 bits (43), Expect = 6e-18
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgg 68
||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 33 cgagtgaatagctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgcgg 91
>47372_ath-miRf10272-akr:pmrd
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 gtgagcgggcgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggtt 60
||||| || ||||||| |||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 24 gtgagaggtcgagtgaatagctggagtcttcttttcctccttgtgctcgagtgtctggtt 83
Query: 61 gagtgc 66
||||||
Sbjct: 84 gagtgc 89
>47253_ath-miRf10153-akr:pmrd
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 gtgagcgggcgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggtt 60
||||| || ||||||||| ||||||||||||| ||||||||||||||| ||||||| |||
Sbjct: 24 gtgagaggtcgagtgatatgctggagtcttctattcttccttgtgctcgagtgtctagtt 83
Query: 61 gagtgc 66
||||||
Sbjct: 84 gagtgc 89
>47123_ath-miRf10023-akr:pmrd
Length = 91
Score = 81.8 bits (41), Expect = 9e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgc 66
||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 33 cgagtgaatagctggactcttcttttcttccttgtgctcgagtgtctggttgagtgc 89
>48099_ath-miRf10999-akr:pmrd
Length = 148
Score = 77.8 bits (39), Expect = 1e-15
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
||||||| ||| ||||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct: 33 cgagtgacaagtcggagtcttcttctcttcctcatgctcgagtgtctggttgagtgcgga 92
Query: 70 atggagaaaactctgaagc 88
|| ||||| ||||| ||||
Sbjct: 93 atcgagaagactctaaagc 111
>47488_ath-miRf10388-akr:pmrd
Length = 148
Score = 77.8 bits (39), Expect = 1e-15
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
||||||| ||| ||||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct: 33 cgagtgacaagtcggagtcttcttctcttcctcatgctcgagtgtctggttgagtgcgga 92
Query: 70 atggagaaaactctgaagc 88
|| ||||| ||||| ||||
Sbjct: 93 atcgagaagactctaaagc 111
>47325_ath-miRf10225-akr:pmrd
Length = 84
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 28 cttcttttcttccttgtgctcaagtgtctggttgagtgcgg 68
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
>47903_ath-miRf10803-akr:pmrd
Length = 149
Score = 63.9 bits (32), Expect = 2e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 56 tggttgagtgcggaatggagaaaactctgaagctggcaatcgagtatg 103
|||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct: 5 tggttgagtgcggaatggagaagacagtgaagctggcagtcgagtatg 52
>48098_ath-miRf10998-akr:pmrd
Length = 140
Score = 56.0 bits (28), Expect = 5e-09
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
||||||| ||| ||||||||||| |||| || ||||| | ||||||||||||||||||
Sbjct: 112 cgagtgacaagtcggagtcttcttctctttctcatgctcgaatgtctggttgagtgcgga 53
Query: 70 atggagaa 77
|| |||||
Sbjct: 52 atcgagaa 45
>47818_ath-miRf10718-akr:pmrd
Length = 148
Score = 56.0 bits (28), Expect = 5e-09
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
||||||| ||| ||||||||||| |||| || ||||| | ||||||||||||||||||
Sbjct: 33 cgagtgacaagtcggagtcttcttctctttctcatgctcgaatgtctggttgagtgcgga 92
Query: 70 atggagaa 77
|| |||||
Sbjct: 93 atcgagaa 100
>47173_ath-miRf10073-akr:pmrd
Length = 148
Score = 56.0 bits (28), Expect = 5e-09
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
||||||| ||| ||||||||||| |||| || ||||| | ||||||||||||||||||
Sbjct: 33 cgagtgacaagtcggagtcttcttctctttctcatgctcgaatgtctggttgagtgcgga 92
Query: 70 atggagaa 77
|| |||||
Sbjct: 93 atcgagaa 100
>47172_ath-miRf10072-akr:pmrd
Length = 148
Score = 56.0 bits (28), Expect = 5e-09
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 10 cgagtgataagctggagtcttcttttcttccttgtgctcaagtgtctggttgagtgcgga 69
||||||| ||| ||||||||||| |||| || ||||| | ||||||||||||||||||
Sbjct: 33 cgagtgacaagtcggagtcttcttctctttctcatgctcgaatgtctggttgagtgcgga 92
Query: 70 atggagaa 77
|| |||||
Sbjct: 93 atcgagaa 100
>47269_ath-miRf10169-akr:pmrd
Length = 253
Score = 48.1 bits (24), Expect = 1e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 50 agtgtctggttgagtgcggaatggagaaaactctgaagctggcaatcgagtatgta 105
|||||||||||||||||| |||||||| | |||||||| ||| ||||||||||
Sbjct: 6 agtgtctggttgagtgcgaaatggagatgatgctgaagctagcatccgagtatgta 61
>47242_ath-miRf10142-akr:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 25 agtcttcttttcttccttgtgctcaagtgtctggttgagtgcgg 68
||||||||| ||||||| ||||| | |||||||||||||||||
Sbjct: 48 agtcttcttctcttcctgatgctcgaatgtctggttgagtgcgg 91
>47938_ath-miRf10838-akr:pmrd
Length = 209
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 86 agctggcaatcgagtatgta 105
||||||||||||||||||||
Sbjct: 163 agctggcaatcgagtatgta 144
>47644_ath-miRf10544-akr:pmrd
Length = 250
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 86 agctggcaatcgagtatgta 105
||||||||||||||||||||
Sbjct: 45 agctggcaatcgagtatgta 64
