miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47187_ath-miRf10087-akr:pmrd
Length = 96
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 agtggtaagctggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaat 60
|||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 7 agtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgcggaat 66
Query: 61 ggagaagactctgaagctgg 80
||||||||||||||||||||
Sbjct: 67 ggagaagactctgaagctgg 86
>47115_ath-miRf10015-akr:pmrd
Length = 98
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 1 agtggtaagctggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaat 60
|||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 8 agtgttaagctggagtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaat 67
Query: 61 ggagaagactctgaagctgg 80
||||||||||||||||||||
Sbjct: 68 ggagaagactctgaagctgg 87
>47615_ath-miRf10515-akr:pmrd
Length = 90
Score = 121 bits (61), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 8 agctggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaatggagaag 67
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 11 agctggagtcttcttttcttccttgtgcttgagtgtctggttgagtgcggaatggagaag 70
Query: 68 actctgaagctgg 80
|||||||||||||
Sbjct: 71 actctgaagctgg 83
>48180_ath-miRf11080-akr:pmrd
Length = 235
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Minus
Query: 8 agctggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaatggagaag 67
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 193 agctggagtcttcttttcttccttgtgcttgagtgtctggttgagtgcggaatggagaag 134
Query: 68 actctgaagct 78
|||||||||||
Sbjct: 133 actctgaagct 123
>47645_ath-miRf10545-akr:pmrd
Length = 94
Score = 115 bits (58), Expect = 5e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 11 tggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaatggagaagact 70
|||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 16 tggagtcttcttttcttccttgtgctcgagtgtctggttgagtgcgaaatggagaagact 75
Query: 71 ctgaagctgg 80
||||||||||
Sbjct: 76 ctgaagctgg 85
>47725_ath-miRf10625-akr:pmrd
Length = 92
Score = 111 bits (56), Expect = 8e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 11 tggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaatggagaagact 70
|||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 18 tggagtcttcttttcttccttgtgctcgagtgtctagttgagtgcggaatggagaagact 77
Query: 71 ctgaagct 78
||||||||
Sbjct: 78 ctgaagct 85
>47125_ath-miRf10025-akr:pmrd
Length = 94
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 8 agctggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaatggagaag 67
||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| |||||
Sbjct: 13 agctggagtcttcttttcttccttgtgctcgagtgtctagttgagtgcggaatgaagaag 72
Query: 68 actctgaagct 78
|||||||||||
Sbjct: 73 actctgaagct 83
>47304_ath-miRf10204-akr:pmrd
Length = 132
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 8 agctggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaatggagaag 67
||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 33 agctggagtcttcttatcttccttgtgctcgtgtgtctggttgagtgcggaatgaagaag 92
Query: 68 actctgaagct 78
||||||||||
Sbjct: 93 gctctgaagct 103
>47247_ath-miRf10147-akr:pmrd
Length = 94
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 8 agctggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaatggagaag 67
||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct: 13 agctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgcggaatgaagaag 72
Query: 68 actctgaagct 78
||||||||||
Sbjct: 73 gctctgaagct 83
>47888_ath-miRf10788-akr:pmrd
Length = 194
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 10 ctggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaatggagaagac 69
||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct: 147 ctggagtcttcttttcttccttgtgctcgagtgtctggttaagtgcggaatgaagaaggc 88
Query: 70 tctgaagct 78
|||||||||
Sbjct: 87 tctgaagct 79
>47525_ath-miRf10425-akr:pmrd
Length = 98
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 8 agctggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaatggagaag 67
|||||||||||||||||||||||| ||||| ||||||| ||||||||| || | ||||||
Sbjct: 15 agctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgcagatttgagaag 74
Query: 68 actctgaagctgg 80
|||||||||||||
Sbjct: 75 actctgaagctgg 87
>48099_ath-miRf10999-akr:pmrd
Length = 148
Score = 91.7 bits (46), Expect = 7e-20
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 12 ggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaatggagaagactc 71
||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||
Sbjct: 46 ggagtcttcttctcttcctcatgctcgagtgtctggttgagtgcggaatcgagaagactc 105
Query: 72 tgaagc 77
| ||||
Sbjct: 106 taaagc 111
>47488_ath-miRf10388-akr:pmrd
Length = 148
Score = 91.7 bits (46), Expect = 7e-20
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 12 ggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaatggagaagactc 71
||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||
Sbjct: 46 ggagtcttcttctcttcctcatgctcgagtgtctggttgagtgcggaatcgagaagactc 105
Query: 72 tgaagc 77
| ||||
Sbjct: 106 taaagc 111
>47494_ath-miRf10394-akr:pmrd
Length = 96
Score = 87.7 bits (44), Expect = 1e-18
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 1 agtggtaagctggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaat 60
|||||||||||||||||||||| |||||||| ||||| ||||||| ||||| ||| ||||
Sbjct: 7 agtggtaagctggagtcttcttttcttccttttgctcgagtgtctagttgaatgcagaat 66
Query: 61 ggagaagactctgaagctgg 80
||||||||| ||||||||
Sbjct: 67 atagaagactccgaagctgg 86
>47186_ath-miRf10086-akr:pmrd
Length = 85
Score = 83.8 bits (42), Expect = 2e-17
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 1 agtggtaagctggagtcttcttctcttccttgtgctcaagtgtctggttgagtg 54
|||| |||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 32 agtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 85
>47369_ath-miRf10269-akr:pmrd
Length = 91
Score = 79.8 bits (40), Expect = 3e-16
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 10 ctggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcgg 57
||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 44 ctggagtcttcttttcttccttgtgctcgagtgtctggttgagtgcgg 91
>47246_ath-miRf10146-akr:pmrd
Length = 91
Score = 75.8 bits (38), Expect = 4e-15
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 8 agctggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcgg 57
||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct: 42 agctggagtcttcttttcttccttgtgctcgagtgtatggttgagtgcgg 91
>47372_ath-miRf10272-akr:pmrd
Length = 91
Score = 71.9 bits (36), Expect = 7e-14
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 8 agctggagtcttcttctcttccttgtgctcaagtgtctggttgagtgc 55
||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct: 42 agctggagtcttcttttcctccttgtgctcgagtgtctggttgagtgc 89
>47123_ath-miRf10023-akr:pmrd
Length = 91
Score = 71.9 bits (36), Expect = 7e-14
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 8 agctggagtcttcttctcttccttgtgctcaagtgtctggttgagtgc 55
||||||| ||||||| |||||||||||||| |||||||||||||||||
Sbjct: 42 agctggactcttcttttcttccttgtgctcgagtgtctggttgagtgc 89
>48098_ath-miRf10998-akr:pmrd
Length = 140
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 12 ggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaatggagaagactc 71
|||||||||||||||| || ||||| | |||||||||||||||||||| ||||||| ||
Sbjct: 99 ggagtcttcttctctttctcatgctcgaatgtctggttgagtgcggaatcgagaagaatc 40
Query: 72 tgaagc 77
| ||||
Sbjct: 39 taaagc 34
>47818_ath-miRf10718-akr:pmrd
Length = 148
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 12 ggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaatggagaagactc 71
|||||||||||||||| || ||||| | |||||||||||||||||||| ||||||| ||
Sbjct: 46 ggagtcttcttctctttctcatgctcgaatgtctggttgagtgcggaatcgagaagaatc 105
Query: 72 tgaagc 77
| ||||
Sbjct: 106 taaagc 111
>47173_ath-miRf10073-akr:pmrd
Length = 148
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 12 ggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaatggagaagactc 71
|||||||||||||||| || ||||| | |||||||||||||||||||| ||||||| ||
Sbjct: 46 ggagtcttcttctctttctcatgctcgaatgtctggttgagtgcggaatcgagaagaatc 105
Query: 72 tgaagc 77
| ||||
Sbjct: 106 taaagc 111
>47172_ath-miRf10072-akr:pmrd
Length = 148
Score = 67.9 bits (34), Expect = 1e-12
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 12 ggagtcttcttctcttccttgtgctcaagtgtctggttgagtgcggaatggagaagactc 71
|||||||||||||||| || ||||| | |||||||||||||||||||| ||||||| ||
Sbjct: 46 ggagtcttcttctctttctcatgctcgaatgtctggttgagtgcggaatcgagaagaatc 105
Query: 72 tgaagc 77
| ||||
Sbjct: 106 taaagc 111
>47325_ath-miRf10225-akr:pmrd
Length = 84
Score = 65.9 bits (33), Expect = 4e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 17 cttcttctcttccttgtgctcaagtgtctggttgagtgcgg 57
|||||| |||||||||||||| |||||||||||||||||||
Sbjct: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
>47253_ath-miRf10153-akr:pmrd
Length = 91
Score = 61.9 bits (31), Expect = 7e-11
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 9 gctggagtcttcttctcttccttgtgctcaagtgtctggttgagtgc 55
||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct: 43 gctggagtcttctattcttccttgtgctcgagtgtctagttgagtgc 89
>47903_ath-miRf10803-akr:pmrd
Length = 149
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 45 tggttgagtgcggaatggagaagactctgaagctgg 80
||||||||||||||||||||||||| |||||||||
Sbjct: 5 tggttgagtgcggaatggagaagacagtgaagctgg 40
>47242_ath-miRf10142-akr:pmrd
Length = 91
Score = 56.0 bits (28), Expect = 4e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 14 agtcttcttctcttccttgtgctcaagtgtctggttgagtgcgg 57
||||||||||||||||| ||||| | |||||||||||||||||
Sbjct: 48 agtcttcttctcttcctgatgctcgaatgtctggttgagtgcgg 91
>47269_ath-miRf10169-akr:pmrd
Length = 253
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 39 agtgtctggttgagtgcggaatggagaagactctgaagct 78
|||||||||||||||||| |||||||| || ||||||||
Sbjct: 6 agtgtctggttgagtgcgaaatggagatgatgctgaagct 45
