miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48180_ath-miRf11080-akr:pmrd
Length = 235
Score = 105 bits (53), Expect = 4e-24
Identities = 65/69 (94%)
Strand = Plus / Minus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagctcgcaatcaagtatg 60
|||| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct: 168 tgcttgagtgtctggttgagtgcggaatggagaagactctgaagctcgccatcgagtatg 109
Query: 61 tagtcgagt 69
|||||||||
Sbjct: 108 tagtcgagt 100
>47115_ath-miRf10015-akr:pmrd
Length = 98
Score = 85.7 bits (43), Expect = 4e-18
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagctcgcaatcaagtat 59
||||||||||||||||||||||||||||| |||||||||||||||| ||| || |||||
Sbjct: 40 tgctcgagtgtctggttgagtgcggaatggagaagactctgaagctggcagtcgagtat 98
>47125_ath-miRf10025-akr:pmrd
Length = 94
Score = 83.8 bits (42), Expect = 1e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagct 46
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 38 tgctcgagtgtctagttgagtgcggaatgaagaagactctgaagct 83
>47888_ath-miRf10788-akr:pmrd
Length = 194
Score = 81.8 bits (41), Expect = 6e-17
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagctcgcaatcaagtatg 60
||||||||||||||||| ||||||||||||||||| |||||||||| | ||| ||||||
Sbjct: 124 tgctcgagtgtctggttaagtgcggaatgaagaaggctctgaagcttgtgatcgagtatg 65
Query: 61 tagtcgagt 69
||||||||
Sbjct: 64 cagtcgagt 56
>47645_ath-miRf10545-akr:pmrd
Length = 94
Score = 81.8 bits (41), Expect = 6e-17
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagctcgcaatc 53
|||||||||||||||||||||||| |||| |||||||||||||||| ||||||
Sbjct: 38 tgctcgagtgtctggttgagtgcgaaatggagaagactctgaagctggcaatc 90
>47615_ath-miRf10515-akr:pmrd
Length = 90
Score = 81.8 bits (41), Expect = 6e-17
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagctcgcaatc 53
|||| |||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 36 tgcttgagtgtctggttgagtgcggaatggagaagactctgaagctggcaatc 88
>47304_ath-miRf10204-akr:pmrd
Length = 132
Score = 81.8 bits (41), Expect = 6e-17
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagctcgcaatcaagtatg 60
|||||| |||||||||||||||||||||||||||| |||||||||| | ||| ||||||
Sbjct: 58 tgctcgtgtgtctggttgagtgcggaatgaagaaggctctgaagcttgtcatcgagtatg 117
Query: 61 tagtcgagt 69
||||||||
Sbjct: 118 cagtcgagt 126
>47725_ath-miRf10625-akr:pmrd
Length = 92
Score = 79.8 bits (40), Expect = 2e-16
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagctcg 48
||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 40 tgctcgagtgtctagttgagtgcggaatggagaagactctgaagctcg 87
>47247_ath-miRf10147-akr:pmrd
Length = 94
Score = 75.8 bits (38), Expect = 3e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagct 46
||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 38 tgctcgagtgtatggttgagtgcggaatgaagaaggctctgaagct 83
>47187_ath-miRf10087-akr:pmrd
Length = 96
Score = 75.8 bits (38), Expect = 3e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagct 46
||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 39 tgctcgattgtctggttgagtgcggaatggagaagactctgaagct 84
>48099_ath-miRf10999-akr:pmrd
Length = 148
Score = 65.9 bits (33), Expect = 3e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagc 45
|||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 67 tgctcgagtgtctggttgagtgcggaatcgagaagactctaaagc 111
>47488_ath-miRf10388-akr:pmrd
Length = 148
Score = 65.9 bits (33), Expect = 3e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagc 45
|||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 67 tgctcgagtgtctggttgagtgcggaatcgagaagactctaaagc 111
>47903_ath-miRf10803-akr:pmrd
Length = 149
Score = 58.0 bits (29), Expect = 8e-10
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 13 tggttgagtgcggaatgaagaagactctgaagctcgcaatcaagtatgtagtcgagt 69
||||||||||||||||| ||||||| ||||||| ||| || |||||| ||||||||
Sbjct: 5 tggttgagtgcggaatggagaagacagtgaagctggcagtcgagtatgaagtcgagt 61
>47269_ath-miRf10169-akr:pmrd
Length = 253
Score = 56.0 bits (28), Expect = 3e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 6 gagtgtctggttgagtgcggaatgaagaagactctgaagctcgcaatcaagtatgtagtc 65
||||||||||||||||||| |||| ||| || |||||||| ||| | |||||||||||
Sbjct: 5 gagtgtctggttgagtgcgaaatggagatgatgctgaagctagcatccgagtatgtagtc 64
Query: 66 gagt 69
||||
Sbjct: 65 gagt 68
>47525_ath-miRf10425-akr:pmrd
Length = 98
Score = 52.0 bits (26), Expect = 5e-08
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagct 46
||||||||||||| ||||||||| || | ||||||||||||||||
Sbjct: 40 tgctcgagtgtcttgttgagtgcagatttgagaagactctgaagct 85
>48098_ath-miRf10998-akr:pmrd
Length = 140
Score = 50.1 bits (25), Expect = 2e-07
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagc 45
||||||| |||||||||||||||||||| |||||| ||| ||||
Sbjct: 78 tgctcgaatgtctggttgagtgcggaatcgagaagaatctaaagc 34
>47818_ath-miRf10718-akr:pmrd
Length = 148
Score = 50.1 bits (25), Expect = 2e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagc 45
||||||| |||||||||||||||||||| |||||| ||| ||||
Sbjct: 67 tgctcgaatgtctggttgagtgcggaatcgagaagaatctaaagc 111
>47369_ath-miRf10269-akr:pmrd
Length = 91
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcgg 25
|||||||||||||||||||||||||
Sbjct: 67 tgctcgagtgtctggttgagtgcgg 91
>47325_ath-miRf10225-akr:pmrd
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcgg 25
|||||||||||||||||||||||||
Sbjct: 60 tgctcgagtgtctggttgagtgcgg 84
>47173_ath-miRf10073-akr:pmrd
Length = 148
Score = 50.1 bits (25), Expect = 2e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagc 45
||||||| |||||||||||||||||||| |||||| ||| ||||
Sbjct: 67 tgctcgaatgtctggttgagtgcggaatcgagaagaatctaaagc 111
>47172_ath-miRf10072-akr:pmrd
Length = 148
Score = 50.1 bits (25), Expect = 2e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagc 45
||||||| |||||||||||||||||||| |||||| ||| ||||
Sbjct: 67 tgctcgaatgtctggttgagtgcggaatcgagaagaatctaaagc 111
>47372_ath-miRf10272-akr:pmrd
Length = 91
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgc 23
|||||||||||||||||||||||
Sbjct: 67 tgctcgagtgtctggttgagtgc 89
>47123_ath-miRf10023-akr:pmrd
Length = 91
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgc 23
|||||||||||||||||||||||
Sbjct: 67 tgctcgagtgtctggttgagtgc 89
>47494_ath-miRf10394-akr:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 1e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcggaatgaagaagactctgaagct 46
||||||||||||| ||||| ||| |||| ||||||||| ||||||
Sbjct: 39 tgctcgagtgtctagttgaatgcagaatatagaagactccgaagct 84
>47246_ath-miRf10146-akr:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcgg 25
||||||||||| |||||||||||||
Sbjct: 67 tgctcgagtgtatggttgagtgcgg 91
>47242_ath-miRf10142-akr:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgcgg 25
||||||| |||||||||||||||||
Sbjct: 67 tgctcgaatgtctggttgagtgcgg 91
>47648_ath-miRf10548-akr:pmrd
Length = 213
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 atcaagtatgtagtcgagt 69
|||||||||||||||||||
Sbjct: 3 atcaagtatgtagtcgagt 21
>47253_ath-miRf10153-akr:pmrd
Length = 91
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 tgctcgagtgtctggttgagtgc 23
||||||||||||| |||||||||
Sbjct: 67 tgctcgagtgtctagttgagtgc 89
