miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47088_ath-miR855:pmrd
Length = 272
Score = 99.6 bits (50), Expect = 2e-22
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 9 gaggagtgtcgatcgacacactcctggtgtcgatcgacaccagtttcggcccag 62
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 59 gaggagtgtcgatcgacacactcttggtgtcgatcgacaccagtttcggcccag 112
Score = 38.2 bits (19), Expect = 6e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 32 ctggtgtcgatcgacacca 50
|||||||||||||||||||
Sbjct: 101 ctggtgtcgatcgacacca 83
>47022_ath-miR401:pmrd
Length = 250
Score = 77.8 bits (39), Expect = 8e-16
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 12 gagtgtcgatcgacacactcctggtgtcgatcgacaccagtttcggcccag 62
||||||||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct: 152 gagtgtcgagcgacacactcttggtgtcggtcgacaccagtttcggcccag 102
>47511_ath-miRf10411-akr:pmrd
Length = 144
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 34 ggtgtcgatcgacaccagtt 53
||||||||||||||||||||
Sbjct: 128 ggtgtcgatcgacaccagtt 109
>47198_ath-miRf10098-akr:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 ggtgtcgatcgacaccagtt 53
||||||||||||||||||||
Sbjct: 15 ggtgtcgatcgacaccagtt 34
>48258_ath-miRf11158-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 6e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 14 gtgtcgatcgacacactcctggtgtcgatcgacac 48
|||||||||||||| || |||||||| |||||||
Sbjct: 2 gtgtcgatcgacaccctgttggtgtcggtcgacac 36
