miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47523_ath-miRf10423-akr:pmrd
Length = 122
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 tgatgtctcgtatatatgcgatggtgtcgatcgacacca 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 84 tgatgtctcgtatatatgcgatggtgtcgatcgacacca 122
>47593_ath-miRf10493-akr:pmrd
Length = 126
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 tgatgtctcgtatatatgcgatggtgtcgatcgacac 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 86 tgatgtctcgtatatatgcgatggtgtcgatcgacac 122
>47934_ath-miRf10834-akr:pmrd
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 cgatggtgtcgatcgacaccaag 41
|||||||||||||||||||||||
Sbjct: 66 cgatggtgtcgatcgacaccaag 88
>47554_ath-miRf10454-akr:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 4e-06
Identities = 38/42 (90%), Gaps = 2/42 (4%)
Strand = Plus / Minus
Query: 19 cgatggtgtcgatcgacaccaagggttggtgtcgttcgacac 60
|||||||||||||||||||| | |||||||||| |||||||
Sbjct: 47 cgatggtgtcgatcgacaccca--gttggtgtcgctcgacac 8
>47224_ath-miRf10124-akr:pmrd
Length = 111
Score = 46.1 bits (23), Expect = 4e-06
Identities = 38/42 (90%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 19 cgatggtgtcgatcgacaccaagggttggtgtcgttcgacac 60
|||||||||||||||||||| | |||||||||| |||||||
Sbjct: 66 cgatggtgtcgatcgacaccca--gttggtgtcgctcgacac 105
>47147_ath-miRf10047-akr:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 18 gcgatggtgtcgatcgacacca 39
||||||||||||||||||||||
Sbjct: 91 gcgatggtgtcgatcgacacca 70
>47088_ath-miR855:pmrd
Length = 272
Score = 42.1 bits (21), Expect = 6e-05
Identities = 36/40 (90%), Gaps = 2/40 (5%)
Strand = Plus / Minus
Query: 22 tggtgtcgatcgacaccaagggttggtgtcgttcgacact 61
|||||||||||||||||||| || |||||| ||||||||
Sbjct: 100 tggtgtcgatcgacaccaagagt--gtgtcgatcgacact 63
>48073_ath-miRf10973-akr:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 cgatggtgtcgatcgacacc 38
||||||||||||||||||||
Sbjct: 52 cgatggtgtcgatcgacacc 71
>47364_ath-miRf10264-akr:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 20 gatggtgtcgatcgacacca 39
||||||||||||||||||||
Sbjct: 79 gatggtgtcgatcgacacca 60
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 21 atggtgtcgatcgacacca 39
|||||||||||||||||||
Sbjct: 59 atggtgtcgatcgacacca 77
>47363_ath-miRf10263-akr:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 20 gatggtgtcgatcgacacca 39
||||||||||||||||||||
Sbjct: 79 gatggtgtcgatcgacacca 60
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 21 atggtgtcgatcgacacca 39
|||||||||||||||||||
Sbjct: 59 atggtgtcgatcgacacca 77
>48231_ath-miRf11131-akr:pmrd
Length = 82
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 20 gatggtgtcgatcgacacc 38
|||||||||||||||||||
Sbjct: 31 gatggtgtcgatcgacacc 13
>48116_ath-miRf11016-akr:pmrd
Length = 103
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 20 gatggtgtcgatcgacacc 38
|||||||||||||||||||
Sbjct: 99 gatggtgtcgatcgacacc 81
>48109_ath-miRf11009-akr:pmrd
Length = 116
Score = 38.2 bits (19), Expect = 0.001
Identities = 37/42 (88%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 19 cgatggtgtcgatcgacaccaagggttggtgtcgttcgacac 60
|||||||||||||| ||||| | |||||||||| |||||||
Sbjct: 68 cgatggtgtcgatcaacaccca--gttggtgtcggtcgacac 107
>47836_ath-miRf10736-akr:pmrd
Length = 99
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20 gatggtgtcgatcgacacc 38
|||||||||||||||||||
Sbjct: 3 gatggtgtcgatcgacacc 21
>47826_ath-miRf10726-akr:pmrd
Length = 75
Score = 38.2 bits (19), Expect = 0.001
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 22 tggtgtcgatcgacaccaagggttggtgtcgttcgacac 60
|||||||| || |||||| ||||||||||||||||||
Sbjct: 48 tggtgtcgttcaacaccatctgttggtgtcgttcgacac 10
>47692_ath-miRf10592-akr:pmrd
Length = 65
Score = 38.2 bits (19), Expect = 0.001
Identities = 34/38 (89%), Gaps = 2/38 (5%)
Strand = Plus / Plus
Query: 23 ggtgtcgatcgacaccaagggttggtgtcgttcgacac 60
|||||||||||||||| | |||||||||| |||||||
Sbjct: 17 ggtgtcgatcgacaccta--gttggtgtcgctcgacac 52
>47511_ath-miRf10411-akr:pmrd
Length = 144
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 20 gatggtgtcgatcgacacc 38
|||||||||||||||||||
Sbjct: 36 gatggtgtcgatcgacacc 18
>47509_ath-miRf10409-akr:pmrd
Length = 112
Score = 38.2 bits (19), Expect = 0.001
Identities = 34/38 (89%), Gaps = 2/38 (5%)
Strand = Plus / Plus
Query: 23 ggtgtcgatcgacaccaagggttggtgtcgttcgacac 60
|||||||||||||||| | |||||||||| |||||||
Sbjct: 70 ggtgtcgatcgacaccca--gttggtgtcgctcgacac 105
>47506_ath-miRf10406-akr:pmrd
Length = 103
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 20 gatggtgtcgatcgacacc 38
|||||||||||||||||||
Sbjct: 99 gatggtgtcgatcgacacc 81
>47330_ath-miRf10230-akr:pmrd
Length = 112
Score = 38.2 bits (19), Expect = 0.001
Identities = 34/38 (89%), Gaps = 2/38 (5%)
Strand = Plus / Plus
Query: 23 ggtgtcgatcgacaccaagggttggtgtcgttcgacac 60
|||||||||||||||| | |||||||||| |||||||
Sbjct: 70 ggtgtcgatcgacaccca--gttggtgtcgctcgacac 105
>47198_ath-miRf10098-akr:pmrd
Length = 140
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20 gatggtgtcgatcgacacc 38
|||||||||||||||||||
Sbjct: 107 gatggtgtcgatcgacacc 125
>47190_ath-miRf10090-akr:pmrd
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20 gatggtgtcgatcgacacc 38
|||||||||||||||||||
Sbjct: 4 gatggtgtcgatcgacacc 22
