miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47088_ath-miR855:pmrd
Length = 272
Score = 46.1 bits (23), Expect = 3e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 14 tggtgtcgatcgataccatgatggtgtcgatcgacactc 52
||||||||||||| |||| || ||||||||||||||||
Sbjct: 100 tggtgtcgatcgacaccaagagtgtgtcgatcgacactc 62
>48258_ath-miRf11158-akr:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 4e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 15 ggtgtcgatcgataccatgatggtgtcgatcgacact 51
|||||||||||| ||| || |||||||| ||||||||
Sbjct: 1 ggtgtcgatcgacaccctgttggtgtcggtcgacact 37
>48231_ath-miRf11131-akr:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 30 catgatggtgtcgatcgacac 50
|||||||||||||||||||||
Sbjct: 34 catgatggtgtcgatcgacac 14
>47511_ath-miRf10411-akr:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 30 catgatggtgtcgatcgacac 50
|||||||||||||||||||||
Sbjct: 39 catgatggtgtcgatcgacac 19
>47198_ath-miRf10098-akr:pmrd
Length = 140
Score = 42.1 bits (21), Expect = 4e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 catgatggtgtcgatcgacac 50
|||||||||||||||||||||
Sbjct: 104 catgatggtgtcgatcgacac 124
>47593_ath-miRf10493-akr:pmrd
Length = 126
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 33 gatggtgtcgatcgacact 51
|||||||||||||||||||
Sbjct: 105 gatggtgtcgatcgacact 123
