miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>54886_vvi-miR403a:pmrd
          Length = 115

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 68  gcgttagattcacgcacaaact 89
           ||||||||||||||||||||||
Sbjct: 82  gcgttagattcacgcacaaact 103

>51760_ptc-miR403b:pmrd
          Length = 100

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 68 gcgttagattcacgcacaaact 89
          ||||||||||||||||||||||
Sbjct: 68 gcgttagattcacgcacaaact 89

>54890_vvi-miR403e:pmrd
          Length = 115

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 69  cgttagattcacgcacaaact 89
           |||||||||||||||||||||
Sbjct: 83  cgttagattcacgcacaaact 103

>54888_vvi-miR403c:pmrd
          Length = 115

 Score = 42.1 bits (21), Expect = 9e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 69  cgttagattcacgcacaaact 89
           |||||||||||||||||||||
Sbjct: 83  cgttagattcacgcacaaact 103

>54889_vvi-miR403d:pmrd
          Length = 86

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 70 gttagattcacgcacaaact 89
          ||||||||||||||||||||
Sbjct: 55 gttagattcacgcacaaact 74

>54887_vvi-miR403b:pmrd
          Length = 86

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 70 gttagattcacgcacaaact 89
          ||||||||||||||||||||
Sbjct: 55 gttagattcacgcacaaact 74