miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48539_gma-miR159a:pmrd
Length = 214
Score = 416 bits (210), Expect = e-117
Identities = 213/214 (99%)
Strand = Plus / Plus
Query: 8 aattaaaggggattatgaagtggagctccttgaagtccaattgaggatcttactgggtga 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aattaaaggggattatgaagtggagctccttgaagtccaattgaggatcttactgggtga 60
Query: 68 attgagctgcttagctatggatcccacagttctacccatcaataagtgcttttgtggtag 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attgagctgcttagctatggatcccacagttctacccatcaataagtgcttttgtggtag 120
Query: 128 tcttgtggcttccatatctggggagcttcatttgcctttatagtattaaccttctttgga 187
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcttgtggcttccatatttggggagcttcatttgcctttatagtattaaccttctttgga 180
Query: 188 ttgaagggagctctacacccttctcttcttttct 221
||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgaagggagctctacacccttctcttcttttct 214
>54378_pvu-miR159:pmrd
Length = 174
Score = 260 bits (131), Expect = 4e-70
Identities = 166/177 (93%), Gaps = 3/177 (1%)
Strand = Plus / Plus
Query: 27 gtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctatg 86
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
Query: 87 gatcccacagttctacccatcaataagtgcttttgtggtagtcttgtggcttccatatct 146
|||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct: 61 gatcccacagttctacccatcagcatg---ttttgtggtagtcttgtggcttccatatct 117
Query: 147 ggggagcttcatttgcctttatagtattaaccttctttggattgaagggagctctac 203
|||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||
Sbjct: 118 ggggagcttcatctgcctctatagtatcatccttctttggattgaagggagctctac 174
>54377_pvu-miR159:pmrd
Length = 174
Score = 260 bits (131), Expect = 4e-70
Identities = 166/177 (93%), Gaps = 3/177 (1%)
Strand = Plus / Plus
Query: 27 gtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctatg 86
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
Query: 87 gatcccacagttctacccatcaataagtgcttttgtggtagtcttgtggcttccatatct 146
|||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct: 61 gatcccacagttctacccatcagcatg---ttttgtggtagtcttgtggcttccatatct 117
Query: 147 ggggagcttcatttgcctttatagtattaaccttctttggattgaagggagctctac 203
|||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||
Sbjct: 118 ggggagcttcatctgcctctatagtatcatccttctttggattgaagggagctctac 174
>54777_vvi-miR159c:pmrd
Length = 190
Score = 85.7 bits (43), Expect = 1e-17
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 26 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 85
||||||||||||||||||||||| |||| ||||||||||| ||||||||||| | |||
Sbjct: 7 agtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttat 66
Query: 86 ggatcccacag 96
|||||||||||
Sbjct: 67 ggatcccacag 77
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 177 ccttctttggattgaagggagctctacacc 206
|||| |||||||||||||||||||||||||
Sbjct: 155 ccttgtttggattgaagggagctctacacc 184
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 75.8 bits (38), Expect = 1e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 26 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 85
||||||||||||||||||||||| |||| |||| |||||| ||| ||||||| ||||||
Sbjct: 4 agtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctat 63
Query: 86 ggatcc 91
||||||
Sbjct: 64 ggatcc 69
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 182 tttggattgaagggagctctacaccc 207
||||||||||||||||||||| ||||
Sbjct: 149 tttggattgaagggagctctaaaccc 174
>51604_ptc-miR159c:pmrd
Length = 183
Score = 75.8 bits (38), Expect = 1e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 26 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 85
||||||||||||||||||||||| |||| |||| |||||| ||| ||||||| ||||||
Sbjct: 9 agtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctat 68
Query: 86 ggatcc 91
||||||
Sbjct: 69 ggatcc 74
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 182 tttggattgaagggagctctacaccc 207
||||||||||||||||||||| ||||
Sbjct: 154 tttggattgaagggagctctaaaccc 179
>51602_ptc-miR159a:pmrd
Length = 183
Score = 75.8 bits (38), Expect = 1e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 26 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 85
||||||||||||||||||||||| |||| |||| |||||| ||| ||||||| ||||||
Sbjct: 9 agtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctat 68
Query: 86 ggatcc 91
||||||
Sbjct: 69 ggatcc 74
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 182 tttggattgaagggagctctacaccc 207
||||||||||||||||||||| ||||
Sbjct: 154 tttggattgaagggagctctaaaccc 179
>51603_ptc-miR159b:pmrd
Length = 187
Score = 69.9 bits (35), Expect = 8e-13
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 18 gattatgaagtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgc 77
||||||| ||||||||||||||||||||||| || | || | |||||| || |||||||
Sbjct: 1 gattatggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgc 60
Query: 78 ttagctatggatcccacag 96
| ||||||| |||||||||
Sbjct: 61 tgagctatgaatcccacag 79
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 182 tttggattgaagggagctcta 202
|||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctcta 178
>48699_mtr-miR159a:pmrd
Length = 168
Score = 56.0 bits (28), Expect = 1e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 118 tttgtggtagtcttgtggcttccatatctggggagc 153
||||||||||| ||||||||||||||||| ||||||
Sbjct: 87 tttgtggtagttttgtggcttccatatctagggagc 122
>48395_bra-miR159a:pmrd
Length = 185
Score = 54.0 bits (27), Expect = 5e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 178 cttctttggattgaagggagctctaca 204
|||||||||||||||||||||||||||
Sbjct: 159 cttctttggattgaagggagctctaca 185
>48339_bna-miR159:pmrd
Length = 183
Score = 54.0 bits (27), Expect = 5e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 178 cttctttggattgaagggagctctaca 204
|||||||||||||||||||||||||||
Sbjct: 157 cttctttggattgaagggagctctaca 183
>46931_ath-miR159a:pmrd
Length = 184
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 178 cttctttggattgaagggagctctac 203
||||||||||||||||||||||||||
Sbjct: 159 cttctttggattgaagggagctctac 184
>48686_ltu-miR159:pmrd
Length = 345
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 182 tttggattgaagggagctctacacc 206
|||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctacacc 25
>48824_osa-miR159f:pmrd
Length = 188
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 183 ttggattgaagggagctctacacc 206
||||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctacacc 182
>46932_ath-miR159b:pmrd
Length = 196
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 178 cttctttggattgaagggagctct 201
||||||||||||||||||||||||
Sbjct: 164 cttctttggattgaagggagctct 187
>48701_mtr-miR159c:pmrd
Length = 44
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 182 tttggattgaagggagctctaca 204
|||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctaca 23
>54930_zma-miR159a:pmrd
Length = 246
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 tctttggattgaagggagctct 201
||||||||||||||||||||||
Sbjct: 205 tctttggattgaagggagctct 226
>54674_tae-miR159b:pmrd
Length = 255
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 tctttggattgaagggagctct 201
||||||||||||||||||||||
Sbjct: 228 tctttggattgaagggagctct 249
>54631_sof-miR159d:pmrd
Length = 265
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 tctttggattgaagggagctct 201
||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245
>54629_sof-miR159b:pmrd
Length = 266
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 tctttggattgaagggagctct 201
||||||||||||||||||||||
Sbjct: 225 tctttggattgaagggagctct 246
>54628_sof-miR159a:pmrd
Length = 265
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 tctttggattgaagggagctct 201
||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245
>54392_sar-miR159:pmrd
Length = 175
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 tctttggattgaagggagctct 201
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>51338_pgl-miR159:pmrd
Length = 226
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 tctttggattgaagggagctct 201
||||||||||||||||||||||
Sbjct: 204 tctttggattgaagggagctct 225
>48825_osa-miR159m:pmrd
Length = 249
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 tctttggattgaagggagctct 201
||||||||||||||||||||||
Sbjct: 227 tctttggattgaagggagctct 248
>48820_osa-miR159b:pmrd
Length = 188
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 tctttggattgaagggagctct 201
||||||||||||||||||||||
Sbjct: 156 tctttggattgaagggagctct 177
>48819_osa-miR159a:pmrd
Length = 272
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 tctttggattgaagggagctct 201
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
>48796_oru-miR159:pmrd
Length = 274
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 180 tctttggattgaagggagctct 201
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
>48728_mtr-miR319b:pmrd
Length = 42
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 183 ttggattgaagggagctctaca 204
||||||||||||||||||||||
Sbjct: 1 ttggattgaagggagctctaca 22
